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Related Experiment Video

Updated: Jun 1, 2026

The ITS2 Database
16:17

The ITS2 Database

Published on: March 12, 2012

SIDECACHE: Information access, management and dissemination framework for web services.

Mark S Doderer1, Cory Burkhardt, Kay A Robbins

  • 1Greehey Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA. doderer@uthscsa.edu.

BMC Research Notes
|June 16, 2011
PubMed
Summary
This summary is machine-generated.

SideCache automates bioinformatics web service updates by integrating external data. This framework manages dynamic data sources, ensuring downstream services always have the latest information.

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09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

Area of Science:

  • Bioinformatics
  • Web Services
  • Data Integration

Background:

  • Bioinformatics algorithms and datasets are often deployed as web services for broad accessibility and integration.
  • Dynamic data sources and frequent updates from repositories pose challenges for downstream service developers.
  • Manual updates and restarts are common for file-download based services, leading to inefficiencies.

Purpose of the Study:

  • To introduce SideCache, a framework designed to streamline the deployment and updating of bioinformatics web services.
  • To address the challenges of integrating and managing frequently updated external data in web services.
  • To provide solutions for proxy access, rate control, local caching, and automatic updates for bioinformatics web services.

Main Methods:

  • Developed the SideCache framework to manage external data integration for web services.
  • Implemented features for proxy access, rate limiting, and local caching of external data.
  • Enabled automatic updating of web services in response to changes in upstream data sources.

Main Results:

  • SideCache provides a robust framework for deploying web services that integrate periodically updated information.
  • The framework offers essential services like proxy access, rate control, local caching, and automatic updates.
  • Successfully automated the deployment and updating of multiple bioinformatics web services using SideCache.

Conclusions:

  • The SideCache framework effectively automates the deployment and updating of bioinformatics web services.
  • It facilitates the integration of information from remote primary sources like NCBI, NCIBI, and Ensembl.
  • SideCache enables the sharing of research results through derived web services.