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Related Concept Videos

Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Translesion DNA Polymerases02:10

Translesion DNA Polymerases

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...

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Related Experiment Video

Updated: May 29, 2026

Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes
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Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes

Published on: April 4, 2025

G-quadruplex-induced instability during leading-strand replication.

Judith Lopes1, Aurèle Piazza, Rodrigo Bermejo

  • 1Recombinaison et Instabilité Génétique, Institut Curie Centre de Recherche, CNRS UMR3244, Université Pierre et Marie Curie, Paris Cedex 05, France.

The EMBO Journal
|August 30, 2011
PubMed
Summary
This summary is machine-generated.

G-quadruplexes in yeast can impede DNA replication. Their instability during replication depends on orientation and requires the Pif1 helicase, impacting genome evolution.

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In Vitro Chemical Mapping of G-Quadruplex DNA Structures by Bis-3-Chloropiperidines
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In Vitro Chemical Mapping of G-Quadruplex DNA Structures by Bis-3-Chloropiperidines

Published on: May 12, 2023

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • G-quadruplexes are four-stranded nucleic acid structures with poorly understood biological roles.
  • Replication of G-rich sequences poses challenges to genome stability.

Purpose of the Study:

  • Investigate the biological impact of G-quadruplexes on DNA replication in yeast.
  • Determine the factors influencing G-quadruplex stability during replication.

Main Methods:

  • Utilized the yeast Saccharomyces cerevisiae model system.
  • Employed the CEB1 tandem array and ARS305 replication origin.
  • Used Phen-DC(3) G-quadruplex ligand and Pif1 helicase deletion.
  • Applied two-dimensional (2D) gel electrophoresis to detect replication intermediates.

Main Results:

  • G-quadruplexes form in yeast and can hinder replication.
  • Replication instability of G-quadruplexes is orientation-dependent.
  • Instability requires intact G-quadruplex motifs, ARS305 activity, and is exacerbated by Pif1 absence or Phen-DC(3) treatment.
  • Replication stalling involves Rad51-Rad52-dependent X-shaped intermediates.

Conclusions:

  • G-quadruplex processing is crucial for replication fidelity.
  • Orientation-dependent replication challenges have implications for genome evolution.
  • Findings shed light on the maintenance of G-rich regions like telomeres.