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Updated: May 28, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Tripal: a construction toolkit for online genome databases.

Stephen P Ficklin¹, Lacey-Anne Sanderson, Chun-Huai Cheng

¹Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA.

Database : the Journal of Biological Databases and Curation

|October 1, 2011

Summary

Tripal simplifies creating online genomics databases by integrating Drupal and Chado. This open-source tool manages biological data, reducing IT burdens for researchers.

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Area of Science:

Genomics and Bioinformatics
Computational Biology
Data Management

Background:

Increasing genomics research necessitates accessible online data repositories.
Developing custom databases is IT-intensive and costly for research groups.

Purpose of the Study:

To present Tripal, an integrated software solution for simplified development of biological databases.
To enable researchers to easily manage and share genomics and genetics data online.

Main Methods:

Tripal merges Drupal (Content Management System) with Chado (biological database schema).
It offers web-based tools for Chado installation, data loading, and management of biological information.
Extensions support analysis tool integration (BLAST, InterPro, KEGG, GO) and visualization (GBrowse).

Main Results:

Tripal provides a user-friendly interface for managing diverse biological data within a Chado schema.
It facilitates the integration of various bioinformatics analyses and visualization tools.
The system is customizable and includes user management and non-biological content integration via Drupal.

Conclusions:

Tripal offers an efficient, open-source solution for building and managing specialized biological databases.
It empowers research communities to share genomic data and analyses effectively, overcoming IT challenges.