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Updated: May 27, 2026

Real-time Monitoring of Ligand-receptor Interactions with Fluorescence Resonance Energy Transfer
Published on: August 20, 2012
Theoretical study of the conformational and optical properties of a fluorescent dye. A step toward modeling sensors
Susanna Monti1, Francesca Cicogna, Elisa Passaglia
1Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UoS di Pisa Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy. smonti@pi.iccom.cnr.it
Abstract:
The conformational and photophysical properties in toluene solution of a naphthoic acid derivative, namely 4-naphthoyloxy-1-methoxy-2,2,6,6-tetramethylpiperidine, which can simulate a pendant active group grafted on apolar polymer structures, were studied by means of calculations based on the density functional theory (DFT) and its time-dependent extension (TD-DFT) coupled to a polarizable continuum model (PCM) of the surrounding medium. The conformational landscape was exhaustively explored and the conformers responsible for the absorption and emission spectra were identified through well established computational procedures based on a tuned combination of functional (PBE0) and basis set (N07D) which reproduced satisfactorily the experimental absorption and emission wavelengths.
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