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Related Concept Videos

X-ray Crystallography02:18

X-ray Crystallography

The size of the unit cell and the arrangement of atoms in a crystal may be determined from measurements of the diffraction of X-rays by the crystal, termed X-ray crystallography.
Diffraction
Diffraction is the change in the direction of travel experienced by an electromagnetic wave when it encounters a physical barrier whose dimensions are comparable to those of the wavelength of the light. X-rays are electromagnetic radiation with wavelengths about as long as the distance between neighboring...
X-ray Diffraction of Biological Samples01:10

X-ray Diffraction of Biological Samples

X-ray diffraction or XRD is an analytical tool that utilizes X-rays to study ordered structures such as crystalline organic and inorganic samples, polycrystalline materials, proteins, carbohydrates, and drugs.
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are  scattered by the electron clouds around the sample atoms. The  X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal crystal...
Determination of Crystal Structures01:29

Determination of Crystal Structures

In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...
Protein Diffusion in the Membrane01:24

Protein Diffusion in the Membrane

Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
Van der Waals Interactions01:24

Van der Waals Interactions

Atoms and molecules interact with each other through intermolecular forces. These electrostatic forces arise from attractive or repulsive interactions between particles with permanent, partial, or temporary charges. The intermolecular forces between neutral atoms and molecules are ion–dipole, dipole–dipole, and dispersion forces, collectively known as van der Waals forces.
Atomic Absorption Spectroscopy: Interference01:25

Atomic Absorption Spectroscopy: Interference

Interference leads to systematic error in atomic absorption (AA) measurements by enhancing or diminishing the analytical signal or the background. These interferences can be grouped into three main categories: spectral interference, chemical interference, and physical interference.
Spectral interference occurs when signals from other elements or molecules overlap with the analyte signal, falsely elevating or masking the analyte's absorbance. This interference can be corrected using Zeeman,...

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An Analog Macroscopic Technique for Studying Molecular Hydrodynamic Processes in Dense Gases and Liquids
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Diffuse scattering resulting from macromolecular frustration.

T R Welberry1, A P Heerdegen, D C Goldstone

  • 1Research School of Chemistry, Australian National University, Canberra, ACT 0200, Australia. welberry@rsc.anu.edu.au

Acta Crystallographica. Section B, Structural Science
|November 22, 2011
PubMed
Summary
This summary is machine-generated.

Diffuse scattering in Feline Foamy Virus Gag protein crystals reveals geometric frustration due to packing constraints. This occupational disorder impacts protein structure determination.

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Area of Science:

  • Crystallography
  • Structural Biology
  • Virology

Background:

  • Diffuse scattering provides insights into crystal imperfections.
  • Feline Foamy Virus Gag protein plays a role in viral assembly.

Purpose of the Study:

  • Investigate the cause of diffuse rings in Gag protein crystals.
  • Understand the implications of observed disorder for structure determination.

Main Methods:

  • X-ray diffraction analysis of N-terminal Gag protein crystals.
  • Analysis of diffuse scattering patterns and Bragg peaks.

Main Results:

  • Observed diffuse rings attributed to geometric frustration in molecular packing.
  • Identified occupational disorder with two molecular arrangements (A and B).
  • Disorder explained by arrangements differing by a 0.2c translation to yield specific hk5n reciprocal sections.

Conclusions:

  • Geometric frustration and occupational disorder are key features of this Gag protein crystal.
  • The disorder presents challenges for conventional structure solution methods.
  • Diffuse scattering may offer an alternative route for structural analysis.