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Updated: May 25, 2026

Brain Pericyte Calcium and Hemodynamic Imaging in Transgenic Mice In Vivo
Published on: November 20, 2021
An artery-specific fluorescent dye for studying neurovascular coupling
Zhiming Shen1, Zhongyang Lu, Pratik Y Chhatbar
1Department of Neurosciences, Medical University of South Carolina, Charleston, South Carolina, USA.
Alexa Fluor 633 selectively labels neocortical arteries and arterioles by binding to elastin. This dye aids in measuring arteriole dilation dynamics, but may cause artifacts in neuronal functional imaging.
Area of Science:
- Neuroscience
- Vascular Biology
- Biomedical Imaging
Background:
- Neocortical arteries and arterioles are crucial for brain function.
- Accurate measurement of vascular dynamics is essential for understanding brain activity.
- Existing imaging techniques may face challenges in resolving fine vascular structures.
Purpose of the Study:
- To evaluate Alexa Fluor 633 hydrazide as a selective label for neocortical vasculature.
- To investigate sensory stimulus-evoked arteriole dilation dynamics in vivo.
- To identify potential artifacts introduced by Alexa Fluor 633 during functional imaging.
Main Methods:
- Utilized Alexa Fluor 633 hydrazide to label elastin fibers in neocortical arteries and arterioles.
- Measured arteriole dilation dynamics in response to sensory stimuli in mouse, rat, and cat visual cortex.
- Simultaneously recorded neuronal activity using calcium indicators and blood flow using fluorescein dextran.
Main Results:
- Alexa Fluor 633 demonstrated selective labeling of neocortical arteries and arterioles.
- Arteriole dilation dynamics were successfully measured in response to stimuli.
- Decreased fluorescence from underlying neurons during arteriole dilation was observed, indicating a potential artifact.
Conclusions:
- Alexa Fluor 633 is a valuable tool for selectively visualizing neocortical vasculature.
- The observed artifact necessitates careful consideration during functional imaging experiments.
- This finding impacts the interpretation of neuronal activity measurements in conjunction with vascular imaging.
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