Related Experiment Video
Updated: May 19, 2026

Dithranol as a Matrix for Matrix Assisted Laser Desorption/Ionization Imaging on a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer
Published on: November 26, 2013
Advanced mass calibration and visualization for FT-ICR mass spectrometry imaging
Donald F Smith1, Andriy Kharchenko, Marco Konijnenburg
1FOM Institute AMOLF, Science Park 104, Amsterdam, The Netherlands.
Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry imaging achieves sub-parts-per-million mass accuracy for molecule identification. A novel "Mosaic Datacube" visualization enhances high-resolution data analysis of biological tissues.
Area of Science:
- Analytical Chemistry
- Biotechnology
- Molecular Imaging
Background:
- Mass spectrometry imaging (MSI) using Fourier transform ion cyclotron resonance (FT-ICR) offers high mass accuracy and resolving power.
- FT-ICR MSI enables confident identification of small molecules and lipids directly from biological tissue sections.
- Existing FT-ICR MSI methods face challenges in data calibration and high-resolution visualization.
Purpose of the Study:
- To investigate and improve calibration strategies for FT-ICR MS imaging.
- To develop a novel visualization method for high-resolution FT-ICR MS imaging data.
- To enhance the identification and analysis of molecular information in biological tissues.
Main Methods:
- Development and application of advanced calibration techniques for FT-ICR MS imaging.
- Implementation of total and relative ion abundance correction methods to mitigate ion fluctuations.
- Introduction of the "Mosaic Datacube" for high-resolution visualization of the entire mass range.
Main Results:
- Achieved sub-parts-per-million (ppm) mass accuracy across an entire tissue section.
- Reduced root-mean-square error to 0.158 ppm for 16,764 peaks through ion abundance correction.
- Demonstrated the "Mosaic Datacube"'s ability to resolve spectral features at a 0.001 Da bin width, not visible at lower resolutions.
Conclusions:
- The developed calibration strategies significantly enhance the mass accuracy of FT-ICR MS imaging.
- The "Mosaic Datacube" provides a powerful new tool for visualizing and analyzing high-resolution FT-ICR MS imaging data.
- These advancements facilitate more confident and detailed molecular identification in biological tissues.
More Related Videos
Related Concept Videos
MALDI-TOF Mass Spectrometry
Inductively Coupled Plasma–Mass Spectrometry (ICP–MS): Overview
Mass Analyzers: Overview
Tandem Mass Spectrometry
Mass Spectrometers
Atomic Force Microscopy
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...

