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Updated: May 19, 2026

Murine Model of Intestinal Ischemia-reperfusion Injury
Published on: May 11, 2016
Metabolomic markers for intestinal ischemia in a mouse model
René Fahrner1, Diren Beyoğlu, Guido Beldi
1University Clinic for Visceral Surgery and Medicine, Inselspital Bern, Bern, Switzerland.
Metabolomic analysis identified key serum molecule changes in intestinal ischemia. Inorganic phosphate, urea, and threonic acid were upregulated, while sugars and stearic acid were downregulated, offering potential diagnostic biomarkers.
Area of Science:
- Biochemistry
- Metabolomics
- Medical Diagnostics
Background:
- Diagnosing intestinal ischemia is a significant clinical challenge.
- Identifying reliable biomarkers is crucial for early detection and management.
- Small molecules (<500 M(r)) in serum are potential candidates for diagnostic utility.
Purpose of the Study:
- To employ a metabolomic approach to identify serum small molecules that are upregulated or downregulated in a mouse model of intestinal ischemia.
- To assess the potential of these identified molecules as biomarkers for human intestinal ischemia studies.
Main Methods:
- Established and validated a mouse model of intestinal ischemia using histology and serum TNF-α levels.
- Collected serial serum samples from intestinal ischemia, peritoneal sepsis (positive control), and sham-operated mice.
- Analyzed serum samples using gas chromatography-mass spectrometry (GC-MS) and multivariate data analysis (PCA, OPLS-DA) to identify differential small molecules.
Main Results:
- Significantly upregulated serum molecules in intestinal ischemia included inorganic phosphate (2.4-fold), urea (4.3-fold), and threonic acid (2.9-fold).
- Significantly downregulated serum molecules included stearic acid (1.7-fold), arabinose (2.7-fold), xylose (1.6-fold), glucose (1.4-fold), and ribose (2.2-fold).
- Lactic acid levels remained unchanged in the intestinal ischemia group.
Conclusions:
- The study identified distinct molecular signatures in serum associated with intestinal ischemia, reflecting impaired gut microbiota metabolism, intestinal absorption, and renal function, along with increased oxidative stress.
- The observed changes in small molecules, particularly the lack of change in lactic acid, differentiate from previous findings.
- These identified molecular signatures warrant further evaluation as potential biomarkers in clinical studies for diagnosing intestinal ischemia.
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