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Updated: May 16, 2026

MeRIP-qPCR Assay for Detecting m6A Modification Levels of Specific RNA in Osteosarcoma Cells
Published on: December 30, 2025
Reduced mitochondrial DNA copy number in Chinese patients with osteosarcoma
Man Yu1, Yanfang Wan, Qinghua Zou
1Ontario Cancer Institute/Princess Margaret Hospital, University Health Network, Toronto, ON, Canada M5G 2M9. manyu@uhnres.utoronto.ca
Abstract:
A plethora of somatic mutations and germline variations in mitochondrial DNA (mtDNA) have been increasingly reported in numerous cancer entities including osteosarcoma. However, it remains largely unclear whether mtDNA copy number changes occur during the multistep process of osteosarcoma carcinogenesis. For this purpose, we determined quantitative mtDNA levels in 31 primary osteosarcoma specimens and 5 normal bone tissue samples using a real-time polymerase chain reaction assay. Our data showed that the average mtDNA amount was significantly reduced in osteosarcoma tissues compared with normal bone controls. The copy number of mtDNA was statistically associated with tumor metastasis. There was an approximately 2-fold decrease of mtDNA quantity in tumors with metastasis than that in low-grade tumors without metastasis. Furthermore, change in mtDNA content was linked with somatic mutations in the D-loop regulatory region. Tumors carrying somatic D-loop mutations, at the polycytidine stretch between nucleotide positions 303 and 309 or close to the replication origin sites of the heavy strand, had significantly lowered mtDNA levels in comparison with those without mutations. Taken together, these results provide evidence for the first time that reduced mtDNA content may be critically implicated in the development and/or progression of osteosarcoma. Somatic D-loop mutation is likely one key factor among others leading to altered mtDNA amount in osteosarcoma.
Insights
Mitochondrial DNA (mtDNA) copy number is significantly reduced in osteosarcoma, particularly in metastatic tumors. Somatic D-loop mutations correlate with lower mtDNA levels, suggesting a role in osteosarcoma development.
Area of Science:
- Oncology
- Mitochondrial Biology
- Genetics
Background:
- Mitochondrial DNA (mtDNA) mutations are implicated in various cancers, including osteosarcoma.
- The role of mtDNA copy number alterations in osteosarcoma development remains largely uninvestigated.
Purpose of the Study:
- To investigate quantitative changes in mtDNA copy number during osteosarcoma carcinogenesis.
- To explore the association between mtDNA levels, tumor metastasis, and somatic mutations.
Main Methods:
- Quantitative real-time polymerase chain reaction (PCR) assay.
- Analysis of 31 primary osteosarcoma specimens and 5 normal bone tissues.
- Correlation analysis of mtDNA levels with clinical parameters and D-loop mutations.
Main Results:
- Osteosarcoma tissues exhibited significantly reduced average mtDNA copy number compared to normal bone controls.
- mtDNA copy number was significantly associated with tumor metastasis, with a ~2-fold decrease in metastatic tumors.
- Somatic mutations in the D-loop regulatory region, particularly at the polycytidine stretch (nt 303-309), were linked to significantly lowered mtDNA levels.
Conclusions:
- Reduced mtDNA content is implicated in the development and/or progression of osteosarcoma.
- Somatic D-loop mutations are a key factor contributing to altered mtDNA levels in osteosarcoma.

