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Updated: May 15, 2026

Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
Cell-based systems to assess nuclear receptor activation and their use in drug development
Judy L Raucy1, Jerome M Lasker
1Puracyp, Inc. Carlsbad, CA 92010, USA. jraucy@puracyp.com
Abstract:
The evolution of scientific information relating to the regulation of xenobiotic disposition has extended to the discovery of an intricate group of receptor systems now recognized as master regulators. These ligand-activated transcription factors are commonly designated as "nuclear receptors", and include CAR (NR1I3), PXR (NR1I2), PPAR (NR1C1, NR1C2, and NR1C3) and AhR (HLHE76). As regulators of gene expression, activation of these receptors can elicit a plethora of drug-drug interactions. The aforementioned nuclear receptors bind a wide range of structurally-unrelated ligands, such as steroid hormones, bile acids, and small drug-type molecules. A pivotal nuclear receptor with regards to regulation of drug-drug interactions is the pregnane X receptor (PXR). Gene expression profiling has demonstrated that PXR regulates over 60 human genes that are involved not only in physiological functions but also in the metabolism of xenobiotics. Moreover, chemical library screening suggests that about 10% of the compounds comprising the U. S. Food and Drug Administration 1 and 2, Sigma-Aldrich LOPAC collection, Biomol, and Tocris/TimTec bioactive collection libraries exhibit some form of PXR binding. For these reasons, efficient, rapid and economical systems have been developed to identify nuclear receptor ligands. Cell-based assays encompassing transiently and stably-transfected cells and mammalian two-hybrid systems are currently being employed by the pharmaceutical industry to screen compounds for binding to and/or activation of nuclear receptors. Overall, these systems have the ability to predict in vivo responses to receptor activation that culminate in drug-drug interactions and adverse drug effects.
Insights
Nuclear receptors, like pregnane X receptor (PXR), regulate gene expression and can cause drug-drug interactions. New cell-based assays efficiently screen for PXR ligands, predicting adverse drug effects.
Area of Science:
- Pharmacology
- Molecular Biology
- Biochemistry
Background:
- Nuclear receptors are key regulators of gene expression involved in xenobiotic metabolism.
- Pregnane X receptor (PXR) is a pivotal nuclear receptor implicated in drug-drug interactions.
- PXR regulates over 60 human genes involved in physiological functions and xenobiotic metabolism.
Purpose of the Study:
- To highlight the role of nuclear receptors, particularly PXR, in regulating drug metabolism and interactions.
- To discuss the development of efficient systems for identifying nuclear receptor ligands.
- To emphasize the predictive value of these systems for in vivo responses and adverse drug effects.
Main Methods:
- Utilized gene expression profiling to identify PXR-regulated genes.
- Employed chemical library screening to assess PXR binding.
- Developed and utilized cell-based assays, including transfected cells and mammalian two-hybrid systems, for screening nuclear receptor ligands.
Main Results:
- PXR was found to regulate a significant number of genes related to xenobiotic metabolism.
- Approximately 10% of tested compounds across various libraries showed PXR binding.
- Cell-based assays and mammalian two-hybrid systems demonstrated efficacy in identifying nuclear receptor ligands.
Conclusions:
- Nuclear receptor activation, especially by PXR, can lead to significant drug-drug interactions.
- Efficient screening systems are crucial for identifying ligands that modulate nuclear receptor activity.
- These assays predict in vivo responses, aiding in the prevention of adverse drug effects.
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