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Updated: May 15, 2026

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A 3D Cartographic Description of the Cell by Cryo Soft X-ray Tomography
Published on: March 15, 2021
Laboratory-based cryogenic soft x-ray tomography with correlative cryo-light and electron microscopy
David B Carlson1, Jeff Gelb, Vadim Palshin
1Department of Molecular and Cellular Biology, University of California Davis, 1 Shields Avenue, Davis, CA 95616, USA.
Summary
We developed a new laboratory cryogenic soft X-ray microscope for imaging whole cells. This advanced microscopy technique reveals detailed subcellular structures in yeast cells without chemical fixation.
Area of Science:
- Cell Biology
- Microscopy
- Biophysics
Background:
- Understanding cellular ultrastructure is crucial for biological research.
- Traditional methods like electron microscopy require chemical fixation and sectioning, which can introduce artifacts.
- Cryo-soft X-ray microscopy offers a potential alternative for imaging hydrated, unstained cells.
Purpose of the Study:
- To present a novel laboratory-based cryogenic soft X-ray microscope.
- To demonstrate its capability for whole cell tomography of frozen hydrated samples.
- To enable correlative imaging with other cryo-microscopy techniques.
Main Methods:
- Development of a compact cryogenic soft X-ray microscope.
- Whole cell tomography of Saccharomyces cerevisiae.
- Imaging unstained yeast cells using cryo-fluorescence light microscopy, cryo-soft X-ray microscopy, and cryo-transmission electron microscopy.
Main Results:
- Achieved better than 50 nm half-pitch spatial resolution.
- Visualized internal subcellular structures of yeast cells.
- Detected structures as small as 90 nm with a low radiation dose (7.2 MGy).
- Enabled imaging of biological cells up to 5 μm thick.
Conclusions:
- The developed cryogenic soft X-ray microscope provides high-resolution 3D ultrastructure determination of whole cells.
- It allows multimodal correlative imaging of the same cell.
- This technology offers greater access to imaging unstained, hydrated cells without fixation or sectioning.
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