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Updated: May 12, 2026

Efficient Production and Identification of CRISPR/Cas9-generated Gene Knockouts in the Model System Danio rerio
Published on: August 28, 2018
The CRISPR system--keeping zebrafish gene targeting fresh.
Patrick R Blackburn1, Jarryd M Campbell, Karl J Clark
1Department of Biochemistry and Molecular Biology, Mayo Addiction Research Center, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
New genome editing tools like transcription activator-like effector nucleases (TALENs) and CRISPR/Cas are revolutionizing gene targeting in zebrafish. These advanced technologies offer improved efficiency and accessibility for researchers worldwide.
Area of Science:
- Molecular Biology
- Genetics
- Zebrafish Model Organisms
Background:
- The late 1990s saw the advent of zinc finger nucleases (ZFNs), enabling custom nuclease-targeted genome engineering.
- ZFNs presented challenges for many research labs due to production complexity, high costs, and variable efficacy.
- Transcription activator-like effector nucleases (TALENs) emerged, improving targeting flexibility and efficiency.
Purpose of the Study:
- To review advancements in genome engineering tools for zebrafish.
- To highlight the impact of TALENs and CRISPR/Cas systems on gene targeting accessibility and efficiency.
- To discuss how these tools overcome bottlenecks in zebrafish genetic research.
Main Methods:
- Review of nuclease-based genome engineering technologies.
- Comparative analysis of ZFNs, TALENs, and CRISPR/Cas systems.
- Focus on application and accessibility in zebrafish laboratories.
Main Results:
- TALENs offer significant improvements in targeting flexibility and efficiency over ZFNs.
- TALENs are open-source, affordable, and easily produced in-house, enhancing accessibility for zebrafish labs.
- The CRISPR/Cas system promises further simplification of targeted genome engineering.
Conclusions:
- TALENs and CRISPR/Cas systems represent a new era in genome editing for model organisms.
- These tools democratize genome engineering, making advanced applications in zebrafish more attainable.
- The adoption of these technologies will accelerate genetic research and gene targeting in zebrafish.
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CRISPR/Cas9 Genome Editing
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CRISPR
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