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Updated: May 9, 2026

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Noninvasive In Vivo Small Animal MRI and MRS: Basic Experimental Procedures
Published on: October 20, 2009
A Post-processing framework for localized 2D MR spectroscopy in vivo.
Hidehiro Watanabe1, Nobuhiro Takaya, Fumiyuki Mitsumori
1Center for Environmental Measurement and Analysis, National Institutes for Environmental Studies.
Summary
A new post-processing framework enhances localized 2D magnetic resonance spectroscopy (MRS) in vivo. This method corrects eddy currents and subject motion, improving spectral quality and quantitation for in vivo 2D spectroscopy.
Area of Science:
- Magnetic Resonance Spectroscopy (MRS)
- In Vivo Imaging
- Neuroimaging
Background:
- Localized 2D MRS provides valuable metabolic information in vivo.
- Conventional methods face challenges with spectral quality due to artifacts like eddy currents and motion.
Purpose of the Study:
- To introduce and validate a novel post-processing framework for localized 2D MRS in vivo.
- To improve spectral quality and quantitation by addressing eddy current and motion artifacts.
Main Methods:
- Developed a framework incorporating eddy current and subject motion correction for localized 2D MRS.
- Eddy current correction involved phase correction of metabolite signals using water signals.
- Motion correction focused on phase correction of specific metabolite peaks (e.g., NAA) after frequency drift correction.
Main Results:
- Eddy current correction resulted in symmetric singlet patterns in phantom spectra, resolving asymmetry.
- Motion correction effectively suppressed t1 noise in human brain spectra, which was present without correction.
- The framework was applied to localized 2D constant-time correlation spectroscopy (CT-COSY) data.
Conclusions:
- The proposed post-processing framework significantly improves the quality of in vivo 2D MRS spectra.
- This advancement holds potential for enhanced quantitation and robustness in in vivo 2D spectroscopic studies.
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