Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Molecular Models02:00

Molecular Models

Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
Two-Dimensional Microscopy in Microbiology01:29

Two-Dimensional Microscopy in Microbiology

Two-dimensional (2D) microscopy encompasses a range of optical techniques that capture images within a single focal plane, offering detailed representations of microscopic structures. These techniques are essential in biological and medical research, enabling the visualization of cellular and subcellular structures with different levels of contrast and specificity.There are several major types of 2D microscopy, each with strengths and applications.Bright-Field MicroscopyBright-field microscopy...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

<i>MaSpeQC</i>: An easy-to-use Interactive Pipeline to Assess the Performance of LC-MS/MS Instrumentation.

Journal of proteome research·2026
Same author

Prostate cancer risk-associated single-nucleotide polymorphisms impact the conformational dynamics of prostate-specific antigen.

BMC biology·2025
Same author

Allosteric Anti-KLK4 Antibody Development for Targeted Anti-cancer Effects in Ovarian Carcinoma.

Journal of molecular biology·2025
Same author

Structure and dynamics of GAD65 in complex with an autoimmune polyendocrine syndrome type 2-associated autoantibody.

Nature communications·2025
Same author

mRNA Display Pipeline for Protein Biosensor Construction.

ACS sensors·2024
Same author

Author Correction: Macromolecular condensation buffers intracellular water potential.

Nature·2024
Same journal

Quantitative analysis of light-induced ion segregation in mixed-halide perovskites.

Journal of applied crystallography·2026
Same journal

Towards machine-learning-based on-the-fly analysis of neutron reflectometry.

Journal of applied crystallography·2026
Same journal

<i>mcstas_gisans</i>: combining ray tracing with the distorted-wave Born approximation using <i>McStas</i> and <i>BornAgain</i> for virtual GISANS experiments.

Journal of applied crystallography·2026
Same journal

Computational methods for automated center determination in electron diffraction patterns.

Journal of applied crystallography·2026
Same journal

Epitaxy of ultrathin Fe<sub>3</sub>O<sub>4</sub> films on SrTiO<sub>3</sub>(001): influence of growth parameters on the formation of coexisting (111)- and (001)-oriented phases.

Journal of applied crystallography·2026
Same journal

Spin excitations near the pressure-induced antiferromagnetic transition in SrCu<sub>2</sub>(BO<sub>3</sub>)<sub>2</sub>.

Journal of applied crystallography·2026
See all related articles

Related Experiment Video

Updated: May 7, 2026

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

Interactive visualization tools for the structural biologist.

Benjamin T Porebski1, Bosco K Ho, Ashley M Buckle

  • 1Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3800, Australia.

Journal of Applied Crystallography
|September 27, 2013
PubMed
Summary
This summary is machine-generated.

Structural biologists can now quickly manage large datasets using custom file visualization plugins for X-ray diffraction images and Protein Data Bank (PDB) files, streamlining data inspection.

Keywords:
PDB visualizationX-ray diffraction imagesdata management

More Related Videos

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

Related Experiment Videos

Last Updated: May 7, 2026

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

Area of Science:

  • Structural Biology
  • Biophysics
  • Computational Biology

Background:

  • Managing numerous Protein Data Bank (PDB) files and X-ray diffraction images is a significant challenge in structural biology.
  • Current software is not optimized for efficient file management and rapid inspection of large datasets.

Purpose of the Study:

  • To develop a solution for efficient management and visualization of structural biology files.
  • To reduce the time and effort required for inspecting X-ray diffraction data quality.

Main Methods:

  • Leveraging the Macintosh operating system's (OSX) custom visualization plugin functionality.
  • Developing software plugins for direct visualization of diffraction images and PDB files within the file browser.

Main Results:

  • Custom plugins enable direct visualization of diffraction images and PDB structures in the file browser.
  • This facilitates rapid identification of key files by simple scrolling.

Conclusions:

  • The developed plugins offer a practical solution to file management challenges in structural biology.
  • Direct file visualization significantly improves the efficiency of data inspection and dataset selection.