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Updated: May 7, 2026

Isolation of Fidelity Variants of RNA Viruses and Characterization of Virus Mutation Frequency
Published on: June 16, 2011
Lethal mutagenesis failure may augment viral adaptation
Matthew L Paff1, Steven P Stolte, James J Bull
1Department of Integrative Biology, University of Texas.
Abstract:
Lethal mutagenesis, the attempt to extinguish a population by elevating its mutation rate, has been endorsed in the virology literature as a promising approach for treating viral infections. In support of the concept, in vitro studies have forced viral extinction with high doses of mutagenic drugs. However, the one known mutagenic drug used on patients commonly fails to cure infections, and in vitro studies typically find a wide range of mutagenic conditions permissive for viral growth. A key question becomes how subsequent evolution is affected if the viral population is mutated but avoids extinction--Is viral adaptation augmented rather than suppressed? Here we consider the evolution of highly mutated populations surviving mutagenesis, using the DNA phage T7. In assays using inhibitory hosts, whenever resistance mutants were observed, the mutagenized populations exhibited higher frequencies, but some inhibitors blocked plaque formation by even the mutagenized stock. Second, outgrowth of previously mutagenized populations led to rapid and potentially complete fitness recovery but polymorphism was slow to decay, and mutations exhibited inconsistent patterns of change. Third, the combination of population bottlenecks with mutagenesis did cause fitness declines, revealing a vulnerability that was not apparent from mutagenesis of large populations. The results show that a population surviving high mutagenesis may exhibit enhanced adaptation in some environments and experience little negative fitness consequences in many others.
Insights
Lethal mutagenesis can enhance viral adaptation rather than suppress it. Surviving highly mutated viral populations may show increased adaptation and rapid fitness recovery, with bottlenecks revealing a key vulnerability.
Area of Science:
- Virology
- Evolutionary Biology
- Genetics
Background:
- Lethal mutagenesis aims to eradicate viruses by increasing mutation rates.
- While in vitro studies show promise, clinical applications of mutagenic drugs often fail.
- A critical question is whether surviving mutated viruses adapt better.
Purpose of the Study:
- To investigate the evolutionary consequences for viral populations that survive lethal mutagenesis.
- To determine if viral adaptation is augmented or suppressed after mutagenesis.
Main Methods:
- Using the DNA phage T7 to study highly mutated populations.
- Employing inhibitory hosts to assess resistance mutant frequencies.
- Analyzing fitness recovery and mutation patterns after mutagenesis, including population bottlenecks.
Main Results:
- Mutagenized phage populations showed higher frequencies of resistance mutants in some inhibitory hosts.
- Outgrowth of mutagenized populations led to rapid fitness recovery, but with slow decay of polymorphism.
- Combining mutagenesis with population bottlenecks significantly reduced fitness, a vulnerability not seen in large populations.
Conclusions:
- Viral populations surviving high mutagenesis can exhibit enhanced adaptation in certain environments.
- These populations may experience minimal negative fitness consequences under many conditions.
- Population bottlenecks represent a critical vulnerability for viruses undergoing mutagenesis.
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