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Assessment of DNA Contamination in RNA Samples Based on Ribosomal DNA
Published on: January 22, 2018
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Nuclear ribosomal RNA genes: ITS region
1UMR C53 PVBMT Université de la Réunion - Cirad, Université de la Réunion, Ile de la Réunion, France.
Methods in Molecular Biology (Clifton, N.J.)
|January 14, 2014
Summary
Sequencing the ribosomal RNA gene ITS region is a popular method for plant taxonomy and phylogeny. This study provides a protocol for PCR amplification and sequencing using universal plant primers, despite potential drawbacks.
Area of Science:
- Molecular Biology
- Botany
- Genetics
Background:
- The ribosomal RNA gene ITS region is widely used in plant taxonomy and phylogeny.
- Potential drawbacks include intraspecific polymorphisms and fungal contamination.
Purpose of the Study:
- To provide a reliable protocol for PCR amplification and sequencing of the ribosomal RNA gene ITS region.
- To facilitate accurate plant identification and evolutionary studies.
Main Methods:
- Polymerase Chain Reaction (PCR) amplification of the ribosomal RNA gene ITS region.
- DNA sequencing using universal plant primers.
Main Results:
- A standardized protocol for sequencing the ITS region was developed.
- The protocol is effective for plant taxonomy and phylogenetic analyses.
Conclusions:
- The ribosomal RNA gene ITS region sequencing protocol is a valuable tool for plant science.
- This method aids in resolving plant relationships and species identification.
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