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Updated: Apr 25, 2026

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
RET mutation and expression in small-cell lung cancer
Snehal Dabir1, Shahab Babakoohi, Amy Kluge
1*Division of Hematology and Oncology, Case Western Reserve University and University Hospitals Case Medical Center, Cleveland, Ohio; †Department of Medicine, MedStar Good Samaritan Hospital, Baltimore, Maryland; ‡Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio; §Division of Pathology, Case Western Reserve University and University Hospitals Case Medical Center, Cleveland, Ohio; and ‖Human Biology Division, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Background:
There is growing interest in defining the somatic mutations associated with small-cell lung cancer (SCLC). Unfortunately, a serious blockade to genomic analyses of this disease is a limited access to tumors because surgery is rarely performed. We used our clinical/pathologic database of SCLC patients to determine the availability of biopsy specimens that could be used for genomic studies and to identify tumors for initial oncogene analysis.
Methods:
DNA was extracted from six tumors, three primary and three metastatic, and analyzed by SEQUENOM platform technology.
Results:
Primary-resected tumor tissue represents less than 3% of all diagnostic specimens in this disease, highlighting the limited access to tissue sufficient for comprehensive genomic analyses. We identified an activating M918T RET somatic mutation in a metastatic SCLC tumor specimen. Bioinformatic search identified RET mutations in other SCLC studies. Stable overexpression of both mutant M918T and wild-type RET in two SCLC cell lines, H1048 and SW1271, activated ERK signaling, MYC expression, and increased cell proliferation, particularly by mutant RET. Stable cells became sensitized to the RET tyrosine kinase inhibitors, vandetanib and ponatinib. Further analysis of RET mRNA expression in SCLC revealed wide variability in both cells and tumors, and SCLC cells demonstrated significantly higher RET expression compared with adenocarcinoma lung cells.
Conclusions:
Our data suggest that a subpopulation of SCLC patients may derive benefit from tyrosine kinase inhibitors targeting RET. Coupled with the presence of RET fusion proteins in non-small-cell lung cancer, our data indicate an emerging role for RET in SCLC.
Insights
Genomic analysis of small-cell lung cancer (SCLC) is challenging due to limited tissue access. Researchers found an activating RET mutation in SCLC, suggesting potential benefit from RET tyrosine kinase inhibitors.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Small-cell lung cancer (SCLC) genomic characterization is hindered by limited surgical tumor access.
- Defining somatic mutations in SCLC is crucial for developing targeted therapies.
- This study aimed to assess biopsy specimen availability for genomic analysis in SCLC.
Purpose of the Study:
- To determine the feasibility of genomic studies using available SCLC biopsy specimens.
- To identify oncogenic drivers for initial analysis in SCLC.
- To investigate the role of RET signaling in SCLC.
Main Methods:
- DNA extraction from six SCLC tumor specimens (three primary, three metastatic).
- Genomic analysis using SEQUENOM platform technology.
- Functional studies in SCLC cell lines (H1048, SW1271) with wild-type and mutant RET overexpression.
Main Results:
- Limited availability (<3%) of primary-resected tumor tissue for comprehensive genomic analysis.
- Identification of an activating M918T RET somatic mutation in a metastatic SCLC specimen.
- Overexpression of mutant RET activated ERK signaling, MYC expression, and cell proliferation, sensitizing cells to RET inhibitors (vandetanib, ponatinib).
- SCLC cells showed significantly higher RET expression compared to lung adenocarcinoma cells.
Conclusions:
- A subset of SCLC patients may benefit from RET-targeting tyrosine kinase inhibitors.
- RET appears to play an emerging role in SCLC, similar to its role in non-small-cell lung cancer (NSCLC).
- Further investigation into RET alterations in SCLC is warranted.
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