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Updated: Apr 19, 2026
Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
Improving the Mann-Whitney statistical test for feature selection: an approach in breast cancer diagnosis on
Noel Pérez Pérez1, Miguel A Guevara López2, Augusto Silva3
1Institute of Mechanical Engineering and Industrial Management (INEGI), Campus da FEUP, Rua Dr. Roberto Frias, 400, 4200-465 Porto, Portugal.
Objective:
This work addresses the theoretical description and experimental evaluation of a new feature selection method (named uFilter). The uFilter improves the Mann-Whitney U-test for reducing dimensionality and ranking features in binary classification problems. Also, it presented a practical uFilter application on breast cancer computer-aided diagnosis (CADx).
Materials And Methods:
A total of 720 datasets (ranked subsets of features) were formed by the application of the chi-square (CHI2) discretization, information-gain (IG), one-rule (1Rule), Relief, uFilter and its theoretical basis method (named U-test). Each produced dataset was used for training feed-forward backpropagation neural network, support vector machine, linear discriminant analysis and naive Bayes machine learning algorithms to produce classification scores for further statistical comparisons.
Results:
A head-to-head comparison based on the mean of area under receiver operating characteristics curve scores against the U-test method showed that the uFilter method significantly outperformed the U-test method for almost all classification schemes (p<0.05); it was superior in 50%; tied in a 37.5% and lost in a 12.5% of the 24 comparative scenarios. Also, the performance of the uFilter method, when compared with CHI2 discretization, IG, 1Rule and Relief methods, was superior or at least statistically similar on the explored datasets while requiring less number of features.
Conclusions:
The experimental results indicated that uFilter method statistically outperformed the U-test method and it demonstrated similar, but not superior, performance than traditional feature selection methods (CHI2 discretization, IG, 1Rule and Relief). The uFilter method revealed competitive and appealing cost-effectiveness results on selecting relevant features, as a support tool for breast cancer CADx methods especially in unbalanced datasets contexts. Finally, the redundancy analysis as a complementary step to the uFilter method provided us an effective way for finding optimal subsets of features without decreasing the classification performances.
