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Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD
Susan K Fetics1, Hugo Guterres2, Bradley M Kearney1
1Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA; Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA.
Abstract:
The Ras/Raf/MEK/ERK signal transduction pathway is a major regulator of cell proliferation activated by Ras-guanosine triphosphate (GTP). The oncogenic mutant RasQ61L is not able to hydrolyze GTP in the presence of Raf and thus is a constitutive activator of this mitogenic pathway. The Ras/Raf interaction is essential for the activation of the Raf kinase domain through a currently unknown mechanism. We present the crystal structures of the Ras-GppNHp/Raf-RBD and RasQ61L-GppNHp/Raf-RBD complexes, which, in combination with MD simulations, reveal differences in allosteric interactions leading from the Ras/Raf interface to the Ras calcium-binding site and to the remote Raf-RBD loop L4. In the presence of Raf, the RasQ61L mutant has a rigid switch II relative to the wild-type and increased flexibility at the interface with switch I, which propagates across Raf-RBD. We show that in addition to local perturbations on Ras, RasQ61L has substantial long-range effects on the Ras allosteric lobe and on Raf-RBD.
Insights
The Ras/Raf/MEK/ERK pathway regulates cell proliferation. Oncogenic RasQ61L mutant constitutively activates this pathway by preventing GTP hydrolysis, with structural insights revealing long-range allosteric effects on Ras and Raf.
Area of Science:
- Molecular Biology
- Cell Signaling
- Structural Biology
Background:
- The Ras/Raf/MEK/ERK pathway is crucial for cell proliferation.
- Ras-guanosine triphosphate (GTP) activates this pathway.
- Oncogenic RasQ61L mutant is constitutively active due to impaired GTP hydrolysis.
Purpose of the Study:
- To elucidate the mechanism of Ras/Raf interaction and Raf kinase activation.
- To present crystal structures of Ras-GppNHp/Raf-RBD and RasQ61L-GppNHp/Raf-RBD complexes.
- To investigate the allosteric effects of the RasQ61L mutation.
Main Methods:
- X-ray crystallography to determine complex structures.
- Molecular Dynamics (MD) simulations.
- Analysis of allosteric interactions and protein flexibility.
Main Results:
- Crystal structures revealed differences in allosteric interactions between wild-type Ras and the RasQ61L mutant with Raf-RBD.
- RasQ61L exhibits a rigid switch II and increased flexibility at the switch I interface.
- Long-range effects of RasQ61L were observed on the Ras allosteric lobe and Raf-RBD.
Conclusions:
- The RasQ61L mutation induces substantial long-range allosteric changes in Ras and Raf-RBD.
- These findings provide mechanistic insights into Ras-driven signaling and oncogenesis.
- Understanding these interactions may inform targeted therapeutic strategies.
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