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Updated: Apr 14, 2026

Bacterial Inner-membrane Display for Screening a Library of Antibody Fragments
Published on: October 15, 2016
Systematic comparison of single-chain Fv antibody-fusion toxin constructs containing Pseudomonas Exotoxin A or
Pietro Della Cristina1, Monica Castagna2, Alessio Lombardi3
1Department of Pathology and Diagnostics, University of Verona, Verona, Italy. pietro.decri@gmail.com.
Background:
Antibodies raised against selected antigens over-expressed at the cell surface of malignant cells have been chemically conjugated to protein toxin domains to obtain immunotoxins (ITs) able to selectively kill cancer cells. Since latest generation immunotoxins are composed of a toxic domain genetically fused to antibody fragment(s) which confer on the IT target selective specificity, we rescued from the hydridoma 4KB128, a recombinant single-chain variable fragment (scFv) targeting CD22, a marker antigen expressed by B-lineage leukaemias and lymphomas. We constructed several ITs using two enzymatic toxins both able to block protein translation, one of bacterial origin (a truncated version of Pseudomonas exotoxin A, PE40) endowed with EF-2 ADP-ribosylation activity, the other being the plant ribosome-inactivating protein saporin, able to specifically depurinate 23/26/28S ribosomal RNA. PE40 was selected because it has been widely used for the construction of recombinant ITs that have already undergone evaluation in clinical trials. Saporin has also been evaluated clinically and has recently been expressed successfully at high levels in a Pichia pastoris expression system. The aim of the present study was to evaluate optimal microbial expression of various IT formats.
Results:
An anti-CD22 scFv termed 4KB was obtained which showed the expected binding activity which was also internalized by CD22+ target cells and was also competed for by the parental monoclonal CD22 antibody. Several fusion constructs were designed and expressed either in E. coli or in Pichia pastoris and the resulting fusion proteins affinity-purified. Protein synthesis inhibition assays were performed on CD22+ human Daudi cells and showed that the selected ITs were active, having IC50 values (concentration inhibiting protein synthesis by 50% relative to controls) in the nanomolar range.
Conclusions:
We undertook a systematic comparison between the performance of the different fusion constructs, with respect to yields in E. coli or P. pastoris expression systems and also with regard to each constructs specific killing efficacy. Our results confirm that E. coli is the system of choice for the expression of recombinant fusion toxins of bacterial origin whereas we further demonstrate that saporin-based ITs are best expressed and recovered from P. pastoris cultures after yeast codon-usage optimization.
Insights
This study optimized microbial expression of anti-CD22 immunotoxins (ITs). Bacterial toxins expressed well in E. coli, while plant toxins were best produced in Pichia pastoris for cancer therapy.
Area of Science:
- Biotechnology
- Molecular Biology
- Cancer Research
Background:
- Immunotoxins (ITs) target cancer cells by chemically conjugating antibodies to toxic domains.
- Recombinant single-chain variable fragments (scFvs) are used for targeted specificity in next-generation ITs.
- CD22 is a target antigen for B-lineage leukemias and lymphomas.
Purpose of the Study:
- To evaluate optimal microbial expression of various immunotoxin (IT) formats.
- To compare the performance of different fusion constructs for IT development.
- To assess the specific killing efficacy of novel ITs.
Main Methods:
- Obtained anti-CD22 scFv (4KB) with expected binding and internalization.
- Constructed and expressed ITs using Pseudomonas exotoxin A (PE40) and saporin in E. coli and Pichia pastoris.
- Performed protein synthesis inhibition assays on CD22+ Daudi cells.
Main Results:
- The anti-CD22 scFv (4KB) demonstrated specific binding and internalization by target cells.
- Expressed ITs showed activity with IC50 values in the nanomolar range.
- Compared yields and specific killing efficacy of different fusion constructs.
Conclusions:
- E. coli is optimal for expressing bacterial toxin-based ITs.
- Pichia pastoris is superior for expressing and recovering saporin-based ITs after codon-usage optimization.
- This work provides insights into optimizing IT production for cancer therapy.

