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Related Concept Videos

Translational Regulation01:29

Translational Regulation

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Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
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The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
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Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
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Riboswitches are RNA elements that regulate gene expression by altering their secondary structures in response to specific effector molecules. These elements, located in the leader regions of certain mRNAs, act as transcriptional regulators by toggling between alternative conformations to control downstream gene expression. Riboswitch-mediated regulation is a precise mechanism for modulating biosynthetic pathways, as exemplified by the riboflavin biosynthesis pathway in Bacillus...
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Identification of Circular RNAs using RNA Sequencing
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Circular RNA Expression: Its Potential Regulation and Function.

Julia Salzman1

  • 1Department of Biochemistry and Stanford Cancer Institute, Stanford University, Stanford, CA, USA.

Trends in Genetics : TIG
|April 7, 2016
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Summary
This summary is machine-generated.

Circular RNAs (circRNAs) are a newly discovered feature of eukaryotic gene expression, found ubiquitously across species. Their varied abundance and cell-specific expression suggest important regulatory roles.

Keywords:
RNARNA splicingcircRNAcircular RNA

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Area of Science:

  • Molecular Biology
  • Genetics
  • RNA Biology

Background:

  • Eukaryotic gene expression traditionally involves messenger RNA (mRNA) and noncoding RNA (ncRNA).
  • In 2012, circular RNA (circRNA) expression was identified as a novel feature of eukaryotic gene expression.
  • CircRNAs are covalently closed molecules, typically formed from exonic sequences via canonical splicing.

Purpose of the Study:

  • To highlight the widespread nature of circRNA expression across eukaryotes.
  • To discuss the variable abundance and cell-type specificity of circRNAs.
  • To raise questions about the regulation and function of circRNAs.

Main Methods:

  • Discovery and characterization of circRNAs in various eukaryotic species.
  • Analysis of circRNA expression patterns across different cell types and developmental stages.
  • Comparative studies of circRNA abundance relative to linear RNA transcripts.

Main Results:

  • CircRNAs are ubiquitously expressed in eukaryotes, not just humans and mice.
  • CircRNA abundance varies significantly by cell type and can surpass linear RNA levels.
  • CircRNAs are particularly enriched in the brain and increase during fetal development.

Conclusions:

  • The discovery of circRNAs expands our understanding of eukaryotic gene expression.
  • Cell-specific expression patterns suggest regulatory roles for circRNAs.
  • Further research is needed to elucidate the mechanisms of circRNA regulation and their functional significance.