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Updated: Mar 21, 2026

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
[A Case of Bacteremia Caused by Ochrobacterium intermedium]
This case study highlights a rare bacteremia caused by Ochrobactrum intermedium, identified using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS). Rapid identification aided timely treatment and recovery.
Area of Science:
- Medical Microbiology
- Clinical Diagnostics
Background:
- Ochrobactrum intermedium (O. intermedium) is an uncommon cause of bacteremia.
- This bacterium is increasingly recognized as an emerging pathogen in both immunocompromised and immunocompetent individuals.
- Accurate identification of Ochrobactrum species can be challenging with conventional biochemical methods.
Observation:
- An 86-year-old male patient presented with right-sided paralysis and dysphagia, diagnosed as pontine infarction.
- The patient developed fever and signs of localized infection at the peripheral venous catheter site.
- Blood cultures revealed gram-negative bacilli, initially suspected as aspiration pneumonia.
Findings:
- Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) accurately identified the causative agent as Ochrobactrum intermedium.
- The patient received appropriate antimicrobial chemotherapy, initially sulbactam/ampicillin, then meropenem.
- The patient recovered fully within seven days without relapse.
Implications:
- MALDI-TOF MS is a valuable tool for the rapid and accurate identification of emerging pathogens like O. intermedium.
- Early and precise microbial identification is crucial for effective treatment of rare bacteremias.
- This case underscores the importance of considering less common pathogens in clinical settings, especially with advanced diagnostic technologies.
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