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Efficient Application of De Novo RNA Assemblers for Proteomics Informed by Transcriptomics.

Toni Luge1, Cornelius Fischer1,2, Sascha Sauer1,2,3

  • 1Otto-Warburg-Laboratory, Max Planck Institute for Molecular Genetics , Ihnestraße 63-73, 14195 Berlin, Germany.

Journal of Proteome Research
|August 16, 2016
PubMed
Summary

Researchers can now use resource-friendly RNA assembly tools for proteomics informed by transcriptomics (PIT) workflows. Alternative tools like SOAPdenovo-Trans offer faster, less computationally intensive protein database generation compared to Trinity.

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