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wigExplorer, a BioJS component to visualise wig data.

Anil S Thanki1, Rafael C Jimenez2, Gemy G Kaithakottil1

  • 1Earlham Institute, Norwich Research Park, Norwich, NR4 7UH, UK.

F1000Research
|February 13, 2014
PubMed
Summary
This summary is machine-generated.

wigExplorer is a BioJS component for visualizing wig-formatted data, commonly used in genome browsers. It offers easy navigation and interaction with other components, simplifying genomic data visualization.

Keywords:
BioJSdata visualisationgenome browsers

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Wiggle (wig) files are a standard format for storing genome-wide data, frequently used by genome browsers.
  • Existing visualization tools may lack specific features for interactive exploration of wig data.
  • BioJS is a community-driven effort to create reusable JavaScript components for bioinformatics.

Purpose of the Study:

  • To introduce wigExplorer, a BioJS component for visualizing wig-formatted data.
  • To provide a user-friendly platform for navigating and interacting with genomic data visualizations.
  • To ensure compatibility and integration within the broader bioinformatics software ecosystem.

Main Methods:

  • Development of wigExplorer as a BioJS component adhering to the BioJS standard specification.
  • Implementation of features for easy navigation of the visualization canvas.
  • Integration of predefined events for interaction with other bioinformatics components.

Main Results:

  • wigExplorer offers a straightforward method for configuring and installing the visualization component.
  • The component facilitates intuitive navigation of the visible genomic data region.
  • wigExplorer supports interaction with other BioJS components through defined events, enhancing workflow integration.

Conclusions:

  • wigExplorer provides an accessible and interactive platform for visualizing wig-formatted genomic data.
  • Its adherence to BioJS standards ensures ease of use and integration into existing bioinformatics pipelines.
  • The component enhances the utility of wig files for researchers using genome browsers.