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The development of non-coding RNA ontology
Jingshan Huang1, Karen Eilbeck2, Barry Smith3
1School of Computing, University of South Alabama, Shelby Hall, Room 1123, 150 Jaguar Drive Mobile, AL 36688, USA, huang@southalabama.edu.
International Journal of Data Mining and Bioinformatics
|December 20, 2016
Summary
The Non-Coding RNA Ontology (NCRO) addresses challenges in annotating non-coding RNA (ncRNA) data. This new ontology provides a standardized vocabulary for ncRNA biological and clinical information.
Area of Science:
- Molecular Biology
- Bioinformatics
- Genomics
Background:
- Advances in identifying non-coding RNAs (ncRNAs) have outpaced data annotation methods.
- Current ncRNA data lacks standardized semantic elements and common data exchange standards.
- This hinders the comprehensive analysis of vast ncRNA biological and clinical datasets.
Purpose of the Study:
- To develop a comprehensive ontology for non-coding RNA data.
- To establish a standardized controlled vocabulary for ncRNA research.
- To facilitate semantic annotation and data exchange in the ncRNA field.
Main Methods:
- Development of the Non-Coding RNA Ontology (NCRO).
- Formal definition of ncRNA terms and relationships.
- Creation of a controlled vocabulary for ncRNA data.
Main Results:
- The Non-Coding RNA Ontology (NCRO) has been successfully developed.
- NCRO provides a formally defined controlled vocabulary for ncRNAs.
- The ontology addresses critical needs in semantic annotation of ncRNA data.
Conclusions:
- The NCRO fills a crucial gap in ncRNA data management.
- It enables standardized semantic annotation of biological and clinical ncRNA data.
- NCRO is expected to improve data integration and analysis in the field.
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