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Updated: Mar 9, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Identification of kinases phosphorylating 13 sites in the nuclear, DNA-binding protein NUCKS
Kirsten Grundt1, Bernd Thiede2, Anne Carine Østvold1
1University of Oslo, Institute of Basic Medical Sciences, Department of Biochemistry, P.O. Box 1112, Blindern N-0317, Oslo, Norway.
Abstract:
NUCKS is a vertebrate specific, nuclear and DNA-binding phospho protein. The protein is highly expressed in rapidly dividing cells, and is overexpressed in a number of cancer tissues. The phosphorylation of NUCKS is cell cycle and DNA-damage regulated, but little is known about the responsible kinases. By utilizing in vitro and in vivo phosphorylation assays using isolated NUCKS as well as synthetic NUCKS-derived peptides in combination with mass spectrometry, phosphopeptide mapping, phosphphoamino acid analyses, phosphospecific antibodies and the use of specific kinase inhibitors, we found that NUCKS is phosphorylated on 11 sites by CK2. At least 7 of the CK2 sites are phosphorylated in vivo. We also found that NUCKS is phosphorylated on two sites by ATM kinase and DNA-PK in vitro, and is phosphorylated in vivo by ATM kinase in γ-irradiated cells. All together, we identified three kinases phosphorylating 13 out of 39 in vivo phosphorylated sites in mammalian NUCKS. The identification of CK2 and PIKK kinases as kinases phosphorylating NUCKS in vivo provide further evidence for the involvement of NUCKS in cell cycle control and DNA repair.
Insights
Nuclear casein kinase substrate (NUCKS) is phosphorylated by CK2 and ATM kinase. These findings suggest NUCKS
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Nuclear casein kinase substrate (NUCKS) is a nuclear, DNA-binding phosphoprotein.
- NUCKS is highly expressed in rapidly dividing cells and overexpressed in various cancers.
- NUCKS phosphorylation is regulated by the cell cycle and DNA damage, but responsible kinases are largely unknown.
Purpose of the Study:
- To identify the kinases responsible for NUCKS phosphorylation.
- To elucidate the role of NUCKS in cell cycle control and DNA repair.
Main Methods:
- In vitro and in vivo phosphorylation assays using isolated NUCKS and synthetic peptides.
- Mass spectrometry, phosphopeptide mapping, and phosphoamino acid analyses.
- Phosphospecific antibodies and kinase inhibitors were employed.
Main Results:
- NUCKS is phosphorylated on 11 sites by CK2, with at least 7 sites phosphorylated in vivo.
- ATM kinase and DNA-PK phosphorylate NUCKS on two sites in vitro.
- ATM kinase phosphorylates NUCKS in vivo in gamma-irradiated cells.
Conclusions:
- CK2 and ATM kinase phosphorylate NUCKS in vivo, identifying key kinases involved in its regulation.
- These findings support the involvement of NUCKS in cell cycle control and DNA repair pathways.
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