Related Experiment Video
Updated: Mar 9, 2026

13:04
A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
24.8K
An Optimized Hepatitis C Virus E2 Glycoprotein Core Adopts a Functional Homodimer That Efficiently Blocks Virus Entry
Kathleen McCaffrey1,2,3, Irene Boo1, Catherine M Owczarek4
1Centre for Biomedical Research, Burnet Institute, Melbourne, Australia.
Journal of Virology
|December 30, 2016
Summary
Understanding hepatitis C virus (HCV) E2 glycoprotein variability is key for vaccine design. Removing variable regions impacts CD81 binding and E2 homodimer formation, offering insights into HCV structure and potential vaccine targets.
Area of Science:
- Virology and Immunology
- Structural Biology
- Vaccine Development
Background:
- Hepatitis C virus (HCV) infection is a global health concern with no available vaccine.
- The HCV E2 envelope glycoprotein is a primary target for neutralizing antibodies and vaccine design.
- E2 exhibits significant amino acid variability in hypervariable regions (HVR1, HVR2) and the intergenotypic variable region (igVR), contributing to immune evasion.
Purpose of the Study:
- To investigate the role of the three variable regions (HVR1, HVR2, igVR) in the folding and function of the HCV E2 ectodomain.
- To understand how these variable regions influence the binding of E2 to the host cell receptor CD81.
- To explore the impact of variable regions on the formation of functional E2 homodimers.
Main Methods:
- Characterization of a recombinant E2 ectodomain fragment (rE2) with and without its variable regions.
- Assessment of CD81 binding kinetics following deletion of variable regions.
- Analysis of E2 homodimer formation in the presence and absence of variable motifs.
Main Results:
- Removal of E2 variable regions accelerated binding to the CD81 receptor.
- Simultaneous deletion of HVR2 and igVR was necessary to preserve wild-type CD81-binding characteristics.
- Deletion of variable regions restored the ability of rE2 to form a functional homodimer.
Conclusions:
- The variable regions of HCV E2 modulate the ectodomain's interaction with CD81 and influence higher-order assembly.
- The rE2 core structure provides insights into the role of variable motifs in E2 ectodomain assembly.
- Findings have implications for understanding the E1E2 glycoprotein structure on the virion surface and for universal HCV vaccine design.
More Related Videos
Related Concept Videos
Retroviruses
15.4K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
15.4K
Viruses with RNA Genomes
1.2K
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
1.2K
Eukaryotic Transcription Inhibitors
11.2K
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
11.2K
Cytotoxic T Cells-mediated Immune Response
7.8K
Cytotoxic T cells are a vital component of the immune system. They have the remarkable ability to identify and target antigens on infected or abnormal cells. These antigens often originate from intracellular pathogens such as viruses or abnormal proteins cancer cells produce.
Immunological surveillance is the ability of immune cells to monitor and eliminate infected cells with intracellular pathogens, neoplastically transformed cells, and cells with non-self antigens. Cytotoxic T cells and NK...
Immunological surveillance is the ability of immune cells to monitor and eliminate infected cells with intracellular pathogens, neoplastically transformed cells, and cells with non-self antigens. Cytotoxic T cells and NK...
7.8K
Retrovirus Life Cycles
50.2K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
50.2K
Leaky Scanning
5.8K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.8K

