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Related Concept Videos

Determination of Crystal Structures01:29

Determination of Crystal Structures

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In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...
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Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
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2D NMR: Overview of Homonuclear Correlation Techniques01:16

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Homonuclear correlation spectroscopy (COSY) is a powerful technique used in Nuclear Magnetic Resonance (NMR) spectroscopy to study the correlations between nuclei of the same type within a molecule. It provides information about scalar couplings between adjacent nuclei, which helps determine connectivity and structural information. There are several COSY variants, each with its unique strengths and experimental parameters.
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¹H NMR of Conformationally Flexible Molecules: Temporal Resolution00:52

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At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
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Imperfections in Crystal Structure: Stoichiometric Point Defects01:26

Imperfections in Crystal Structure: Stoichiometric Point Defects

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Schottky defects arise when some lattice points in a crystal, such as those in NaCl, remain unoccupied, creating lattice vacancies without disturbing the overall electrical neutrality of the crystal. This defect is common in ionic crystals where the positive and negative ions are similar in size, as seen in sodium chloride and cesium chloride. The presence of Schottky defects enables the crystal to conduct electricity to a small extent through an ionic mechanism. Electric fields cause nearby...
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NMR Spectrometers: Resolution and Error Correction01:14

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When magnetic nuclei in a sample achieve resonance and undergo relaxation, the signal detected in NMR is an approximately exponential free induction decay. Fourier transform of an exponential decay yields a Lorentzian peak in the frequency domain. Lorentzian peaks in an NMR spectrum are defined by their amplitude, full width at half maximum, and position, where the peak width is governed by the spin-spin relaxation time alone. In real experiments, however, the applied magnetic field is rendered...
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Updated: Mar 8, 2026

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
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Positional Variance in NMR Crystallography.

Albert Hofstetter1, Lyndon Emsley1

  • 1Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne, Switzerland.

Journal of the American Chemical Society
|February 2, 2017
PubMed
Summary
This summary is machine-generated.

We developed a new method to quantify atomic positional uncertainties in crystal structures determined by nuclear magnetic resonance (NMR) crystallography. This approach offers higher accuracy than traditional X-ray diffraction methods.

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Area of Science:

  • Solid-state Nuclear Magnetic Resonance (NMR) Spectroscopy
  • Crystallography
  • Computational Chemistry

Background:

  • Chemical-shift-based NMR crystallography is a powerful technique for determining crystal structures.
  • Quantifying positional uncertainties is crucial for understanding the reliability of these structures.
  • Existing methods for uncertainty quantification in NMR crystallography are limited.

Purpose of the Study:

  • To develop and validate a novel method for quantifying positional uncertainties in crystal structures determined by NMR crystallography.
  • To assess both average and atom-specific positional accuracy (isotropic and anisotropic).
  • To compare the accuracy of NMR crystallography with single-crystal X-ray diffraction.

Main Methods:

  • Combining molecular dynamics (MD) simulations with density functional theory (DFT) calculations.
  • Incorporating experimental and computational chemical shift uncertainties.
  • Applying the method to diverse organic crystal structures, including pharmaceuticals.

Main Results:

  • The developed method successfully quantifies average and atom-specific positional uncertainties.
  • Demonstrated on crystal structures of cocaine, flutamide, flufenamic acid, penicillin G K salt, and AZD8329.
  • For cocaine, the positional Root Mean Square Deviation (RMSD) uncertainty was 0.17 Å.

Conclusions:

  • The proposed method provides a robust way to assess positional accuracy in NMR crystallography.
  • NMR crystallography, using this uncertainty quantification, achieves higher positional accuracy than X-ray diffraction.
  • This advancement enhances the reliability and utility of NMR crystallography for structure determination.