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Updated: Mar 3, 2026

Non-Invasive Model of Neuropathogenic Escherichia coli Infection in the Neonatal Rat
Published on: October 29, 2014
Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens
Yun-Gi Kim1,2, Kei Sakamoto3,2, Sang-Uk Seo3,2
1Department of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. gabriel.nunez@umich.edu yungikim77@gmail.com.
Insights
Neonatal mice lack gut microbiota protection against pathogens due to absent Clostridiales. Supplementing with Clostridiales restores colonization resistance, highlighting its crucial role in infant immunity.
Area of Science:
- Microbiology
- Immunology
- Gastroenterology
Background:
- Neonates exhibit high susceptibility to infections, often attributed to an immature immune system.
- The precise mechanisms underlying this vulnerability and the role of the gut microbiota remain incompletely understood.
Purpose of the Study:
- To investigate the role of the gut microbiota composition in neonatal colonization resistance against bacterial pathogens.
- To identify specific bacterial taxa responsible for protection in early life.
Main Methods:
- Colonization of adult germ-free mice with neonatal and adult mouse cecal microbiota.
- Challenging colonized mice with specific bacterial pathogens known to cause neonatal mortality.
- Administering specific bacterial orders (Clostridiales, Bacteroidales) to assess protective effects.
- Depleting Clostridiales in adult mice to evaluate its necessity for colonization resistance.
Main Results:
- Neonatal microbiota failed to prevent pathogen colonization, unlike adult microbiota.
- Absence of Clostridiales in neonatal microbiota correlated with lack of colonization resistance.
- Administration of Clostridiales, but not Bacteroidales, protected neonatal mice from infection and reduced intestinal pathology.
- Depletion of Clostridiales in adult mice abolished their colonization resistance.
- Neonatal gut bacteria promoted the colonization of protective Clostridiales.
Conclusions:
- The gut microbiota plays a critical role in neonatal colonization resistance, independent of immune system maturity.
- Clostridiales are essential for establishing colonization resistance in both neonatal and adult mice.
- Targeted administration of Clostridiales may offer a therapeutic strategy to prevent or treat neonatal infections.
Abstract:
The high susceptibility of neonates to infections has been assumed to be due to immaturity of the immune system, but the mechanism remains unclear. By colonizing adult germ-free mice with the cecal contents of neonatal and adult mice, we show that the neonatal microbiota is unable to prevent colonization by two bacterial pathogens that cause mortality in neonates. The lack of colonization resistance occurred when Clostridiales were absent in the neonatal microbiota. Administration of Clostridiales, but not Bacteroidales, protected neonatal mice from pathogen infection and abrogated intestinal pathology upon pathogen challenge. Depletion of Clostridiales also abolished colonization resistance in adult mice. The neonatal bacteria enhanced the ability of protective Clostridiales to colonize the gut.
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