Related Experiment Video
Updated: Mar 2, 2026

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
Published on: May 28, 2021
Evolutionary steps involving counterion displacement in a tunicate opsin.
Keiichi Kojima1, Takahiro Yamashita1, Yasushi Imamoto1
1Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Ci-opsin1, an invertebrate opsin, possesses unique counterions that bridge molecular properties between vertebrate and invertebrate opsins. Its evolution reveals key steps in the development of vertebrate visual opsins.
Area of Science:
- Biochemistry
- Evolutionary Biology
- Molecular Biology
Background:
- Ci-opsin1 is a light-sensitive opsin found in the ascidian *Ciona intestinalis*, phylogenetically linking invertebrate and vertebrate opsins.
- Opsins utilize counterions, such as glutamic acid residues, to modulate their molecular and spectral properties.
Purpose of the Study:
- To investigate the synergistic roles of Glu113 and Glu181 in Ci-opsin1's molecular properties.
- To understand the evolutionary significance of counterion acquisition in opsin evolution.
Main Methods:
- Site-directed mutagenesis (E113Q, E181Q, E113Y, E181S) to alter counterion residues.
- Spectroscopic analysis to determine spectral shifts and intermediate formation.
- G protein activation assays to assess signaling efficiency.
Main Results:
- Glu113 and Glu181 act synergistically, creating intermediate molecular properties between vertebrate and invertebrate opsins.
- Ci-opsin1 forms pH-dependent intermediates and shifts equilibrium towards a protonated Schiff base upon G protein interaction, similar to invertebrate opsins.
- Mutations at positions 113 and 181 modulated Ci-opsin1's properties towards invertebrate- or vertebrate-like opsins.
Conclusions:
- The synergistic action of Glu113 and Glu181 in Ci-opsin1 fine-tunes its molecular characteristics.
- Acquisition of Glu113 was a critical evolutionary event in the development of vertebrate visual opsins from a common ancestor.
More Related Videos
08:33Determination of Photoreceptor Cell Spectral Sensitivity in an Insect Model from In Vivo Intracellular Recordings
Published on: February 26, 2016
08:39Whole-cell Patch-clamp Recordings for Electrophysiological Determination of Ion Selectivity in Channelrhodopsins
Published on: May 22, 2017
Related Concept Videos
Photoreceptors and Visual Pathways
Gene Duplication and Divergence
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
Channel Rhodopsins
Rhodopsins belong to the family of cell surface proteins called G-protein coupled receptors,...
Electron Transport Chain: Complex III and IV
Ion Exchange
G-Protein Gated Ion Channels
Sensory...