Related Experiment Video
Updated: Feb 26, 2026

09:54
Fabrication of Refractive-index-matched Devices for Biomedical Microfluidics
Published on: September 10, 2018
8.0K
A tunable refractive index matching medium for live imaging cells, tissues and model organisms
Tobias Boothe1,2,3, Lennart Hilbert1,2,3, Michael Heide1
1Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Elife
|July 15, 2017
Summary
Optical clearing with Iodixanol improves live-specimen imaging by reducing refractive index mismatches. This non-toxic method enhances penetration depth and resolution in microscopy for various live samples.
Area of Science:
- Microscopy and imaging science
- Biomedical optics
- Cell biology
Background:
- Refractive index mismatches in light microscopy cause spherical aberrations, limiting imaging depth and resolution.
- Current optical clearing techniques are effective but restricted to fixed biological samples.
Purpose of the Study:
- To introduce a non-toxic medium supplement for refractive index matching in live specimens.
- To enhance image quality and penetration depth in live-imaged samples.
Main Methods:
- Utilized Iodixanol as a non-toxic medium supplement.
- Applied the supplement to various live biological models including cell cultures, planarians, zebrafish, and organoids.
- Performed light microscopy to assess image quality and penetration.
Main Results:
- Demonstrated successful refractive index matching in live specimens using Iodixanol.
- Significantly improved image quality, including resolution and penetration depth.
- Validated the technique across diverse live samples: primary cell cultures, planarians, zebrafish, and human cerebral organoids.
Conclusions:
- Iodixanol is an effective and non-toxic optical clearing agent for live specimens.
- This method overcomes limitations of traditional optical clearing, enabling high-quality live imaging.
- The technique offers broad applicability for advanced microscopy of living biological systems.
Keywords:
Planariacell biologyconfocal microscopydevelopmental biologylive-imagingorganoidsrefractive index matchingstem cellszebrafishMore Related Videos
Related Concept Videos
Imaging Biological Samples with Optical Microscopy
11.8K
Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
11.8K
Total Internal Reflection Fluorescence Microscopy
13.5K
Total internal reflection fluorescence microscopy or TIRF is an advanced microscopic technique used to visualize fluorophores in samples close to a solid surface with a higher refractive index, such as a glass coverslip. TIRF only allows fluorophores in proximity to the solid surface to be excited. When light from a medium with a lower refractive index (such as air) hits the glass coverslip at a critical angle, the light undergoes total internal reflection stead of passing through the glass.
13.5K

