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Databases for Wheat Genomics and Crop Improvement.

Yuxuan Yuan1, Armin Scheben1, Chon-Kit Kenneth Chan1

  • 1School of Plant Biology and Institute of Agriculture, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.

Methods in Molecular Biology (Clifton, N.J.)
|September 16, 2017
PubMed
Summary
This summary is machine-generated.

High-throughput sequencing generates massive genomic data. This guide explains using databases and tools for efficient wheat genome research and crop breeding applications.

Keywords:
Crop breedingGenome browserGenomicsT3 WheatTAGdbTriticum aestivumWheatIS

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Area of Science:

  • Genomics
  • Bioinformatics
  • Agricultural Science

Background:

  • Advances in high-throughput sequencing have created large volumes of genomic data.
  • Databases are crucial for managing and accessing this information for scientific research.
  • Wheat genome research benefits significantly from accessible data management tools.

Purpose of the Study:

  • To provide an overview of database utilization for wheat genomics.
  • To guide researchers and crop breeders in using bioinformatics tools for wheat genome analysis.
  • To facilitate the application of genomic data in crop improvement.

Main Methods:

  • Outline of database functionalities relevant to genomic data.
  • Description of bioinformatics tools for data retrieval and analysis.
  • Practical examples of database and tool application in wheat research.

Main Results:

  • Researchers can effectively manage and access vast wheat genomic datasets.
  • Bioinformatics tools enable deeper insights into wheat genome structure and function.
  • Improved data accessibility accelerates crop breeding and trait discovery.

Conclusions:

  • Effective use of databases and tools is essential for modern wheat genomics.
  • This chapter empowers researchers to leverage genomic data for agricultural advancements.
  • Streamlined data management enhances the pace of innovation in crop science.