Related Experiment Video
Updated: Feb 20, 2026

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
Published on: August 19, 2025
Circulating Peptidome and Tumor-Resident Proteolysis
Jia Fan1, Bo Ning2, Christopher J Lyon1
1School of Biological and Health Systems Engineering, Virginia G. Piper Biodesign Center for Personalized Diagnostics, The Biodesign Institute, Arizona State University, Tempe, AZ, United States.
Mammalian proteases are key to cellular processes and cancer progression. Studying cancer-associated proteases, degradomes, and tumor peptidomes offers new avenues for cancer diagnosis and treatment.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- Proteases are enzymes crucial for cellular functions and implicated in cancer initiation, progression, and metastasis.
- Human proteases are classified into five catalytic families: metalloprotease, serine protease, cysteine protease, aspartic peptidase, and threonine peptidase.
- Cancer degradomes encompass proteases, inhibitors, and substrates, influencing tumor development and suppression.
Purpose of the Study:
- To review the roles of different human protease families in tumorigenesis, migration, and metastasis.
- To explore the impact of cancer degradomes on cancer promotion and suppression.
- To discuss the potential of tumor peptidomes as cancer biomarkers.
Main Methods:
- Review of existing literature on human protease functions in cancer.
- Analysis of cancer degradome profiling approaches.
- Examination of peptidome study methodologies and their applications.
Main Results:
- Human proteases play significant roles in critical cellular processes and cancer pathogenesis.
- Cancer-associated protein degradation profiles (tumor peptidomes) are valuable sources for biomarker discovery.
- Circulating peptides can serve as biomarkers, reflecting protease activity during cancer progression.
Conclusions:
- Understanding cancer-associated proteases, degradomes, and peptidomes enhances knowledge of cancer biology.
- These components offer potential for improved cancer diagnosis, evaluation, and therapeutic strategies.
- Further research in this area can inspire novel approaches in cancer research and treatment.
Related Concept Videos
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
The Proteasome Structure
The proteasome is an...
Proteomics
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
Role of Matrix Metalloproteases in Degradation of ECM
Translocation of Proteins into the Mitochondria
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...

