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Updated: Feb 15, 2026

Isolation of Brain and Spinal Cord Mononuclear Cells Using Percoll Gradients
Published on: February 2, 2011
Defining standard enzymatic dissociation methods for individual brains and spinal cords in EAE
Rehana Z Hussain1, William A Miller-Little1, Richard Doelger1
1Department of Neurology and Neurotherapeutics (R.Z.H., W.A.M.-L., R.D., P.D.C., O.S.), University of Texas Southwestern Medical Center, Dallas; Department of Biostatistics (G.C.), University of Alabama at Birmingham; The Moody Foundation Flow Cytometry Facility (N.L.), Children's Research Institute, University of Texas Southwestern Medical Center, Dallas; Neurology Section (O.S.), VA North Texas Health Care System, Medical Service, Dallas, TX; and Department of Neurology (O.S.), Klinikum rechts der Isar, Technische Universität München, Germany.
Enzymatic dissociation, particularly the Neural Tissue Dissociation Kit, is the most effective method for isolating mononuclear cells from the central nervous system (CNS) in mice with experimental autoimmune encephalomyelitis (EAE). This method enhances cell yield and correlates with disease severity.
Area of Science:
- Neuroimmunology
- Cellular Biology
- Experimental Pathology
Background:
- Experimental autoimmune encephalomyelitis (EAE) is a mouse model for multiple sclerosis (MS).
- Isolating mononuclear cells from the central nervous system (CNS) is crucial for understanding EAE pathogenesis.
- Standardizing CNS tissue dissociation methods is essential for reliable experimental outcomes.
Purpose of the Study:
- To evaluate and compare the capacity, effectiveness, efficiency, and reliability of different tissue dissociation methods.
- To identify the optimal method for isolating mononuclear cells from the CNS of EAE mice.
- To qualify an assay for downstream analysis in EAE research.
Main Methods:
- Tested Percoll PLUS, a commercial Neural Tissue Dissociation Kit, accutase, and papain.
- Applied criteria: ≥80% cell viability, ≥5 × 10^5 cells/sample, test-retest reliability, and correlation with EAE disease course.
- Utilized C57BL/6 mice with active EAE.
Main Results:
- Enzymatic dissociations significantly increased mononuclear cell yield.
- All enzymatic methods were more efficient and effective than Percoll PLUS.
- Only the Neural Tissue Dissociation Kit showed a significant correlation between cell numbers and EAE disease severity.
Conclusions:
- The Neural Tissue Dissociation Kit is recommended as the standard method for CNS tissue dissociation in EAE.
- Optimized CNS dissociation methods can aid in identifying cellular events relevant to MS pathogenesis.
- This standardization supports reproducible research in neuroinflammatory diseases.
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