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Video Bioinformatics Analysis of Human Embryonic Stem Cell Colony Growth
Published on: May 20, 2010
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Functional video-based analysis of 3D cardiac structures generated from human embryonic stem cells.
Scarlett Nitsch1, Florian Braun1, Sylvia Ritter1
1GSI Helmholtz Center for Heavy Ion Research, Biophysics Department, Darmstadt, Germany.
Stem Cell Research
|April 15, 2018
Summary
We developed cardiac beat rate analyzer (cBRA), a video analysis tool to study beating human embryonic stem cell-derived cardiomyocytes (hESC-CMs). This method reliably measures contractile features in 3D cardiac clusters for high-throughput screening.
Area of Science:
- Stem cell biology
- Cardiovascular research
- Biophysics
Background:
- Human embryonic stem cell-derived cardiomyocytes (hESC-CMs) form complex 3D structures.
- Conventional electrophysiology methods like patch clamp and microelectrode arrays (MEAs) are unsuitable for these detached 3D cardiac clusters.
- Studying contractile function of these 3D structures is crucial for understanding cardiac development and disease.
Purpose of the Study:
- To develop a novel, non-invasive method for analyzing the contractile features of 3D hESC-CM clusters.
- To validate the efficacy of this method across different hESC differentiation protocols.
- To assess the potential of this method for high-throughput cardiotoxicity screening.
Main Methods:
- Development of a video-based motion detection software, cardiac beat rate analyzer (cBRA), utilizing optical flow by Farnebäck.
- Analysis of local displacement between sequential images to calculate beating characteristics.
- Characterization of hESC-CMs from two distinct differentiation protocols with differing morphologies and marker expression.
Main Results:
- cBRA reliably determined beat rates and beating variabilities in 3D cardiac clusters, irrespective of differentiation protocol.
- The software successfully identified functional responses, such as β-adrenoreceptor stimulation by isoproterenol.
- Subtle changes in beating features were detectable, demonstrating the method's sensitivity.
Conclusions:
- cBRA provides a robust and sensitive method for analyzing the contractile function of 3D hESC-CM clusters.
- This video-based approach overcomes limitations of conventional electrophysiology techniques for studying these structures.
- The developed cBRA software is suitable for high-throughput cardiotoxicity screening and functional characterization of cardiac cell models.
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