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Updated: Feb 11, 2026

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Development of Neuroendocrine Prostate Cancers by the Ser/Arg Repetitive Matrix 4-Mediated RNA Splicing Network
Ahn R Lee1, Nicole Che1, Jessica M Lovnicki1
1Vancouver Prostate Centre, Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada.
Abstract:
While the use of next-generation androgen receptor pathway inhibition (ARPI) therapy has significantly increased the survival of patients with metastatic prostate adenocarcinoma (AdPC), several groups have reported a treatment-resistant mechanism, whereby cancer cells can become androgen receptor (AR) indifferent and gain a neuroendocrine (NE)-like phenotype. This subtype of castration-resistant prostate cancer has been termed "treatment-induced castration-resistant neuroendocrine prostate cancer" (CRPC-NE). Recent reports indicate that the overall genomic landscapes of castration-resistant tumors with AdPC phenotypes and CRPC-NE are not significantly altered. However, CRPC-NE tumors have been found to contain a NE-specific pattern throughout their epigenome and splicing transcriptome, which are significantly modified. The molecular mechanisms by which CRPC-NE develops remain unclear, but several factors have been implicated in the progression of the disease. Recently, Ser/Arg repetitive matrix 4 (SRRM4), a neuronal-specific RNA splicing factor that is upregulated in CRPC-NE tumors, has been shown to establish a CRPC-NE-unique splicing transcriptome, to induce a NE-like morphology in AdPC cells, and, most importantly, to transform AdPC cells into CRPC-NE xenografts under ARPI. Moreover, the SRRM4-targeted splicing genes are highly enriched in various neuronal processes, suggesting their roles in facilitating a CRPC-NE program. This article will address the importance of SRRM4-mediated alternative RNA splicing in reprogramming translated proteins to facilitate NE differentiation, survival, and proliferation of cells to establish CRPC-NE tumors. In addition, we will discuss the potential roles of SRRM4 in conjunction with other known pathways and factors important for CRPC-NE development, such as the AR pathway, TP53 and RB1 genes, the FOXA family of proteins, and environmental factors. This study aims to explore the multifaceted functions of SRRM4 and SRRM4-mediated splicing in driving a CRPC-NE program as a coping mechanism for therapy resistance, as well as define future SRRM4-targeted therapeutic approaches for treating CRPC-NE or mitigating its development.
Insights
Ser/Arg repetitive matrix 4 (SRRM4) drives therapy-resistant neuroendocrine prostate cancer by altering RNA splicing. Targeting SRRM4 may offer new treatments for castration-resistant prostate cancer (CRPC-NE).
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Next-generation androgen receptor pathway inhibition (ARPI) improves survival in metastatic prostate adenocarcinoma (AdPC).
- A subset of patients develop treatment-resistant castration-resistant prostate cancer with neuroendocrine (NE) features (CRPC-NE).
- CRPC-NE exhibits distinct epigenomic and transcriptomic patterns, differing from standard AdPC, despite similar genomic landscapes.
Purpose of the Study:
- To investigate the role of Ser/Arg repetitive matrix 4 (SRRM4) in the development of CRPC-NE.
- To explore SRRM4-mediated alternative RNA splicing in driving NE differentiation and therapy resistance.
- To identify potential SRRM4-targeted therapeutic strategies for CRPC-NE.
Main Methods:
- Analysis of SRRM4 expression in CRPC-NE tumors.
- Investigating SRRM4's effect on splicing patterns and cellular morphology in AdPC cells.
- Evaluating SRRM4's role in transforming AdPC cells into CRPC-NE xenografts.
- Examining SRRM4-targeted genes enriched in neuronal processes.
Main Results:
- SRRM4 is upregulated in CRPC-NE and establishes a unique splicing transcriptome.
- SRRM4 induces NE-like morphology and transforms AdPC cells into CRPC-NE xenografts under ARPI.
- SRRM4-targeted genes are involved in neuronal processes, suggesting a role in the CRPC-NE program.
Conclusions:
- SRRM4-mediated alternative RNA splicing is crucial for NE differentiation, survival, and proliferation in CRPC-NE.
- SRRM4 plays a significant role in therapy resistance by facilitating the development of CRPC-NE.
- SRRM4 represents a promising therapeutic target for treating or preventing CRPC-NE.
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