How Messenger RNA and Nascent Chain Sequences Regulate Translation Elongation
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Updated: Feb 8, 2026

Isolation of Ribosome Bound Nascent Polypeptides in vitro to Identify Translational Pause Sites Along mRNA
Published on: July 6, 2012
Junhong Choi1,2, Rosslyn Grosely1, Arjun Prabhakar1,3
1Department of Structural Biology, Stanford University School of Medicine, Stanford, California 94305-5126, USA; email: puglisi@stanford.edu , junhongc@stanford.edu , rgrosely@stanford.edu , arjunp91@stanford.edu , cpl1@stanford.edu , jinfanw@stanford.edu.
Abstract:
Translation elongation is a highly coordinated, multistep, multifactor process that ensures accurate and efficient addition of amino acids to a growing nascent-peptide chain encoded in the sequence of translated messenger RNA (mRNA). Although translation elongation is heavily regulated by external factors, there is clear evidence that mRNA and nascent-peptide sequences control elongation dynamics, determining both the sequence and structure of synthesized proteins. Advances in methods have driven experiments that revealed the basic mechanisms of elongation as well as the mechanisms of regulation by mRNA and nascent-peptide sequences. In this review, we highlight how mRNA and nascent-peptide elements manipulate the translation machinery to alter the dynamics and pathway of elongation.
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