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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
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CD4+ and CD8+ T-Cell-Specific DNA Cytosine Methylation Differences Associated With Obesity
Natalie M Hohos1, Alicia K Smith2, Varun Kilaru2
1Department of Foods and Nutrition, University of Georgia, Athens, Georgia, USA.
Obesity (Silver Spring, Md.)
|June 30, 2018
Summary
Obesity alters DNA methylation in specific blood cells, particularly CD4+ and CD8+ T cells, but not neutrophils. Visceral fat levels correlate with methylation changes in CD4+ T cells, suggesting cell-specific epigenetic responses to obesity.
Area of Science:
- Epigenetics
- Immunology
- Metabolic Disease Research
Background:
- Lifestyle factors linked to obesity can influence epigenome-regulated gene expression.
- Previous studies on obesity-related epigenetic changes often used whole blood, masking cell-specific variations.
- Understanding leukocyte-specific epigenetic alterations is crucial for a nuanced view of obesity's impact.
Purpose of the Study:
- To investigate leukocyte-specific differences in DNA 5´-methylcytosine (5mC) levels associated with obesity.
- To compare epigenetic changes in distinct immune cell types (CD4+ T cells, CD8+ T cells, CD16+ neutrophils) in women with normal weight versus obesity.
Main Methods:
- Isolation of CD4+ T cells, CD8+ T cells, and CD16+ neutrophils from peripheral blood.
- Measurement of 5mC levels across over 450,000 CG sites within these isolated cell types.
- Statistical analysis to identify differentially methylated sites and associations with obesity and visceral adipose tissue.
Main Results:
- Significant differences in DNA methylation were observed between women with obesity and normal weight in CD4+ T cells (19 sites) and CD8+ T cells (16 sites).
- No significant differentially methylated sites were found in CD16+ neutrophils.
- Visceral adipose tissue levels strongly correlated with methylation at 79 CG sites in CD4+ T cells, including regulatory sites in the CLSTN1 gene promoter.
Conclusions:
- The methylomes of different leukocyte types exhibit distinct responses to obesity and visceral adipose tissue.
- Specific differentially methylated sites in CD4+ and CD8+ T cells show biological relevance to obesity.
- These findings highlight the importance of cell-type-specific epigenetic analysis in obesity research.
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