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Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
Published on: July 24, 2018
Clomazone influence soil microbial community and soil nitrogen cycling
Pengqiang Du1, Xiaohu Wu2, Jun Xu2
1State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; College of Chemistry, Central China Normal University, No. 152 Luoyu Road, Wuhan 430079, China.
High concentrations of the herbicide clomazone negatively impacted soil bacterial communities and nitrogen cycling functions, decreasing bacterial diversity and inhibiting nitrogen (N)-fixing bacteria over 90 days.
Area of Science:
- Environmental Science
- Soil Science
- Microbiology
Background:
- Clomazone is a widely used herbicide.
- Understanding its long-term impact on soil ecosystems is crucial.
- Soil microbial communities drive essential nitrogen (N) cycling functions.
Purpose of the Study:
- To investigate the long-term effects of clomazone on soil microbial communities.
- To assess the impact of clomazone on soil nitrogen (N) cycling functions.
- To determine the effects of different clomazone concentrations on soil microbial structure and function.
Main Methods:
- Indoor mesocosm experiment using two Chinese soils.
- Application of clomazone at 0.8, 8, and 80 mg kg⁻¹ dry weight.
- Analysis of soil microbial communities (16S and 18S rDNA sequencing) and N-cycling genes (nifH, amoA) over 90 days.
Main Results:
- Significant negative impacts observed only at the highest clomazone concentration (80 mg kg⁻¹).
- Bacterial diversity decreased, while fungal abundance increased after 60 days.
- Bacterial community structure was negatively impacted, with Sphingomonas and Arthrobacter identified as dominant species.
- Nitrate-N and ammonia-oxidizing bacteria increased initially, while N2-fixing bacteria were inhibited after 60 days.
Conclusions:
- High clomazone concentrations disrupt soil bacterial communities and impair nitrogen (N) cycling functions.
- Long-term exposure can lead to decreased bacterial diversity and inhibition of key microbial groups like N2-fixing bacteria.
- Further research is needed to understand the full ecological implications of clomazone in agricultural soils.
Related Concept Videos
The Soil Ecosystem
The Nitrogen Cycle
Factors Influencing Microbial Growth: pH
The Carbon Cycle
The Sulfur Cycle
The Water Cycle

