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Published on: April 26, 2018
Detection of parvovirus B19 in selected high-risk patient groups & their phylogenetic & selection analysis
Kumaran Vadivel1, Ramamurthy Mageshbabu1, Sathish Sankar1
1Sri Sakthi Amma Institute of Biomedical Research, Sri Narayani Hospital & Research Centre, Vellore, India.
Insights
Human parvovirus B19V (B19V) infection was detected in 1.13% of patients with febrile illness, arthropathies, or end-stage renal disease. Phylogenetic analysis confirmed all detected B19V strains belonged to genotype 1 with low genetic diversity.
Area of Science:
- Virology
- Genetics
- Epidemiology
Background:
- Human parvovirus B19V (B19V) is linked to various conditions including erythema infectiosum, aplastic crisis, hydrops fetalis, and arthritis.
- The prevalence and genetic diversity of B19V in specific patient populations require further investigation.
Purpose of the Study:
- To determine the presence of B19V infection in childhood febrile illnesses.
- To investigate the association of B19V with arthropathies.
- To assess B19V infection in adult patients with end-stage renal disease (ESRD) on dialysis.
- To analyze the genetic diversity of B19V strains.
Main Methods:
- A nested polymerase chain reaction (nPCR) assay targeting the VP1/VP2 region was employed.
- B19V DNA detection was performed on 618 patients and 100 healthy controls.
- Phylogenetic analysis of nucleotide and amino acid sequences was conducted to compare with global strains.
Main Results:
- Seven out of 618 (1.13%) samples tested positive for B19V.
- The positive cases included patients with non-traumatic arthropathies (4), ESRD (2), and febrile illness (1).
- Phylogenetic analysis revealed all seven sequences belonged to genotype 1, exhibiting low genetic diversity and similar clustering patterns.
Conclusions:
- B19V infection is present in patients with febrile illnesses, arthropathies, and ESRD.
- The detected B19V strains are predominantly genotype 1, with limited genetic variation.
- Indian B19V strains showed closer genetic relationships to Tunisian strains than other global strains.
Background & Objectives:
Human parvovirus B19V (B19V) is known to be associated with erythema infectiosum commonly in children, aplastic crisis, especially in persons with underlying haemolytic disorders, hydrops fetalis in pregnancies and arthritis. This cross-sectional study was aimed to determine the presence of B19V infection in childhood febrile illnesses, association of B19V with arthropathies and in adult patients with end-stage renal disease (ESRD) on dialysis. The genetic diversity among the sequences was also analysed.
Methods:
A nested polymerase chain reaction (nPCR) assay was used for B19V DNA targeting VP1/VP2 region and used for testing 618 patients and 100 healthy controls. Phylogenetic analysis on nucleotide and amino acid sequences was carried out to compare our sequences with other Indian strains and global strains.
Results:
Among 618 samples tested, seven (1.13%) were found positive. The phylogenetic analysis revealed that all the seven sequences belonged to genotype 1 and showed low genetic diversity. The clustering pattern of seven sequences was similar both by nucleotide and by predicted amino acid sequences. The fixed effects likelihood analysis showed no positive or negatively selected sites.
Interpretation & Conclusions:
Seven samples (4 from non-traumatic arthropathies, 2 from patients with ESRD and 1 from febrile illness patient) were found positive by nPCR. When our seven sequences were compared with global strains, the closest neighbour was other Indian strains followed by the Tunisian strains.
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