Prognostic and predictive signatures for treatment decisions.
Un Jung Lee1, ShengLi Tzeng2, Yu-Chuan Chen3
1Division of Biochemical Toxicology, National Center for Toxicological Research, US FDA, 3900 NCTR Road, Jefferson, AR 72079, USA.
Biomarkers in Medicine
|July 20, 2018
Summary
This study introduces a new method using prognostic and predictive biomarkers to identify four patient subgroups. The C(S,U) procedure accurately characterizes subpopulations for improved treatment assignment.
Area of Science:
- Biomarker Discovery
- Translational Medicine
- Precision Oncology
Background:
- Accurate patient stratification is crucial for effective treatment selection.
- Identifying distinct patient subpopulations based on biomarkers improves therapeutic outcomes.
Purpose of the Study:
- To develop a subgroup selection procedure utilizing both prognostic and predictive biomarkers.
- To identify four distinct patient subpopulations: low- and high-risk responders and nonresponders.
Main Methods:
- Utilized three regression models to identify prognostic (S), predictive (T), and combined (U) biomarker sets.
- Developed two subgroup identification procedures, C(S,T) and C(S,U), by combining prognostic signature C(S) with predictive signatures C(T) or C(U).
Main Results:
- Simulation experiments demonstrated strong performance for models identifying biomarker sets S and U.
- The C(S,U) procedure showed excellent performance in identifying patient subgroups.
Conclusions:
- The proposed model offers a more comprehensive characterization of patient subpopulations.
- This approach enhances the accuracy of patient treatment assignment through precise stratification.
Related Concept Videos
Decision Making
994
Decision-making is a fundamental cognitive process that involves evaluating alternatives and selecting among them. This process can range from simple choices, such as deciding what to wear, to complex decisions, like choosing a major in college or a career path. The complexity of the decision often dictates the approach we use, which can be broadly categorized into two types: automatic and controlled decision-making.
Automatic decision-making is fast, intuitive, and relies on gut feelings...
Automatic decision-making is fast, intuitive, and relies on gut feelings...
994
Predicting Molecular Geometry
46.0K
VSEPR Theory for Determination of Electron Pair Geometries
46.0K
Prediction Intervals
3.4K
The interval estimate of any variable is known as the prediction interval. It helps decide if a point estimate is dependable.
However, the point estimate is most likely not the exact value of the population parameter, but close to it. After calculating point estimates, we construct interval estimates, called confidence intervals or prediction intervals. This prediction interval comprises a range of values unlike the point estimate and is a better predictor of the observed sample value, y.
However, the point estimate is most likely not the exact value of the population parameter, but close to it. After calculating point estimates, we construct interval estimates, called confidence intervals or prediction intervals. This prediction interval comprises a range of values unlike the point estimate and is a better predictor of the observed sample value, y.
3.4K
Decision Making: P-value Method
7.0K
The process of hypothesis testing based on the P-value method includes calculating the P- value using the sample data and interpreting it.
First, a specific claim about the population parameter is proposed. The claim is based on the research question and is stated in a simple form. Further, an opposing statement to the claim is also stated. These statements can act as null and alternative hypotheses: a null hypothesis would be a neutral statement while the alternative hypothesis can...
First, a specific claim about the population parameter is proposed. The claim is based on the research question and is stated in a simple form. Further, an opposing statement to the claim is also stated. These statements can act as null and alternative hypotheses: a null hypothesis would be a neutral statement while the alternative hypothesis can...
7.0K
End Point Prediction: Gran Plot
1.2K
A Gran plot is used to predict the equivalence volume or endpoint of a potentiometric or acid-base titration without reaching the endpoint. Typically, titration data is collected as a function of the titrant's volume up to a point less than the equivalence volume and then transformed into a linear format. The straight line is extended to the x-axis, indicating the necessary titrant volume to achieve the equivalence point.
For potentiometric titration, the Gran plot is created by plotting...
For potentiometric titration, the Gran plot is created by plotting...
1.2K
Sensitivity, Specificity, and Predicted Value
1.4K
In healthcare diagnostics, laboratory tests play a crucial role in identifying and diagnosing a wide range of medical conditions. However, interpreting test results is not always straightforward. An abnormal test result does not always confirm the presence of a disease, just as a normal result does not guarantee its absence. To assess the reliability of these diagnostic tools, healthcare practitioners rely on two key statistical indicators: sensitivity and specificity.
Sensitivity is the...
Sensitivity is the...
1.4K


