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While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Vibrio cholerae: Model Organism to Study Bacterial Pathogenesis - Interview
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Modeling three-dimensional genomic organization in evolution and pathogenesis.

Alon Diament1, Tamir Tuller2

  • 1Dept. of Biomedical Engineering, Tel Aviv University, Tel Aviv 6997801, Israel.

Seminars in Cell & Developmental Biology
|July 22, 2018
PubMed
Summary
This summary is machine-generated.

Understanding the genome's 3D structure is key to gene expression regulation. This review explores novel methods for analyzing 3D genomic conformation and disease-causing mutations, highlighting comparative analysis for future research.

Keywords:
Comparative genomicsComputational modelsDisease-causing mutationsGene expressionThree-dimensional genomic organization

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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

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Area of Science:

  • Genomics
  • Molecular Biology
  • Computational Biology

Background:

  • Gene expression is regulated by the genome's three-dimensional (3D) conformation and intracellular factor interactions.
  • Understanding the link between 3D genome structure and cellular phenotypes in health and disease is crucial.

Purpose of the Study:

  • To review novel approaches for analyzing and modeling 3D genomic conformation.
  • To focus on deciphering disease-causing mutations impacting gene expression.
  • To emphasize the importance of comparative analysis for future research.

Main Methods:

  • Discussion of experimental and computational approaches for 3D genome analysis.
  • Focus on methods for modeling genomic conformation.
  • Review of techniques for identifying mutations affecting gene expression.

Main Results:

  • Novel methods for analyzing and modeling 3D genomic conformation are discussed.
  • The review highlights the challenges in deciphering disease-causing mutations.
  • Comparative analysis of 3D models across organisms/cells is identified as a key future direction.

Conclusions:

  • Analyzing 3D genomic conformation is essential for understanding gene regulation.
  • Deciphering disease-causing mutations requires advanced analytical and modeling techniques.
  • Comparative analysis of diverse 3D genomic models is crucial for advancing the field.