Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Protein Networks02:26

Protein Networks

4.5K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.5K
Protein Networks02:26

Protein Networks

2.9K
2.9K
Network Covalent Solids02:18

Network Covalent Solids

16.2K
Network covalent solids contain a three-dimensional network of covalently bonded atoms as found in the crystal structures of nonmetals like diamond, graphite, silicon, and some covalent compounds, such as silicon dioxide (sand) and silicon carbide (carborundum, the abrasive on sandpaper). Many minerals have networks of covalent bonds.
To break or to melt a covalent network solid, covalent bonds must be broken. Because covalent bonds are relatively strong, covalent network solids are typically...
16.2K
Integration by Parts: Indefinite Integrals01:26

Integration by Parts: Indefinite Integrals

171
Integration by parts is a fundamental technique in calculus for evaluating integrals involving the product of two functions. It is particularly useful when direct integration is not feasible. The method is based on the product rule for differentiation, which states that the derivative of a product equals the derivative of the first function times the second, plus the first function times the derivative of the second. By integrating this identity and rearranging terms, the integration by parts...
171
Integration by Parts: Definite Integrals01:23

Integration by Parts: Definite Integrals

79
Definite integrals involving the product of two functions over a fixed interval can be evaluated using integration by parts. This method rewrites the integral as the difference of a product evaluated at the endpoints and a remaining definite integral that is often simpler to compute.A representative example is the definite integral of the inverse tangent function. Since there is no direct integration formula for arctan ⁡x, the integrand is rewritten as a product of arctan⁡ x and the...
79
Integrator and Differentiator01:13

Integrator and Differentiator

1.4K
Op-amp circuits have significant applications in various fields, including automotive engineering. One such application is cruise control systems in cars, where op-amp circuits are integral for maintaining a constant speed. In these systems, op-amps function as both integrators and differentiators.
An integrator within an op-amp circuit produces an output directly proportional to the integral of the input signal. This is achieved by replacing the feedback resistor in a typical inverting...
1.4K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Acute myocardial infarction induces sex-specific, time-dependent remodeling of the gut microbiome and intestinal immune compartment in retired breeder C57BL/6N mice.

Frontiers in microbiomes·2026
Same author

From pancreas and islet resources to diabetes insights.

Diabetologia·2026
Same author

Integrated cross-sectional study and functional validation indicate the association of lactobacillus crispatus-derived D-lactic acid with cervical gene expression and precancerous cervical lesions.

Journal of translational medicine·2026
Same author

Interpreting Microbiome Signatures with MicrobiomeNet.

Current protocols·2026
Same author

Metabolomic analysis of macrocyclic lactone susceptible and resistant isolates of Dirofilaria immitis.

International journal for parasitology·2026
Same author

A preliminary study of subcortical gray matter nucleus volumetric and morphological changes in diabetic retinopathy.

Quantitative imaging in medicine and surgery·2025
Same journal

Protein Sequence Analysis Using the MPI Bioinformatics Toolkit.

Current protocols in bioinformatics·2020
Same journal

Exploring Manually Curated Annotations of Intrinsically Disordered Proteins with DisProt.

Current protocols in bioinformatics·2020
Same journal

Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.

Current protocols in bioinformatics·2020
Same journal

Expanding the Perseus Software for Omics Data Analysis With Custom Plugins.

Current protocols in bioinformatics·2020
Same journal

Exploring Non-Coding RNAs in RNAcentral.

Current protocols in bioinformatics·2020
Same journal

How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource.

Current protocols in bioinformatics·2020
See all related articles

Related Experiment Video

Updated: Jan 31, 2026

Direct Bioprinting of 3D Multicellular Breast Spheroids onto Endothelial Networks
06:07

Direct Bioprinting of 3D Multicellular Breast Spheroids onto Endothelial Networks

Published on: November 2, 2020

5.4K

Using OmicsNet for Network Integration and 3D Visualization.

Guangyan Zhou1, Jianguo Xia1,2,3

  • 1Institute of Parasitology, McGill University, Sainte Anne de Bellevue, Quebec, Canada.

Current Protocols in Bioinformatics
|December 18, 2018
PubMed
Summary
This summary is machine-generated.

OmicsNet is a new web tool for building and visualizing biological networks in 3D. It aids systems biology research by integrating multi-omics data for exploring molecular interactions.

Keywords:
3D network visualizationPPITF-gene interactionsmetabolic networkmiRNA-gene interactionsmulti-omics integrationnetwork analysisweb application

More Related Videos

A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery
09:41

A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery

Published on: May 20, 2016

12.7K
Visualization of the Interstitial Cells of Cajal ICC Network in Mice
09:45

Visualization of the Interstitial Cells of Cajal ICC Network in Mice

Published on: July 27, 2011

55.4K

Related Experiment Videos

Last Updated: Jan 31, 2026

Direct Bioprinting of 3D Multicellular Breast Spheroids onto Endothelial Networks
06:07

Direct Bioprinting of 3D Multicellular Breast Spheroids onto Endothelial Networks

Published on: November 2, 2020

5.4K
A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery
09:41

A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery

Published on: May 20, 2016

12.7K
Visualization of the Interstitial Cells of Cajal ICC Network in Mice
09:45

Visualization of the Interstitial Cells of Cajal ICC Network in Mice

Published on: July 27, 2011

55.4K

Area of Science:

  • Bioinformatics
  • Systems Biology
  • Computational Biology

Background:

  • Biological research generates vast amounts of multi-omics data.
  • Integrating and visualizing these complex datasets is challenging.
  • Existing tools often lack comprehensive network visualization and multi-omics integration capabilities.

Purpose of the Study:

  • To introduce OmicsNet, a novel web-based platform for creating and visualizing biological networks in 3D.
  • To facilitate the integration of multi-omics data for systems biology research.
  • To provide researchers with an intuitive tool for exploring molecular interactions.

Main Methods:

  • OmicsNet couples a comprehensive knowledgebase with WebGL technology.
  • Protocols cover network creation from molecular lists (single/multiple).
  • Protocols detail network integration, enrichment, and 3D navigation.

Main Results:

  • OmicsNet enables intuitive exploration of molecular interactions and regulatory relationships.
  • The platform supports visualization of genes, transcription factors, microRNAs, and metabolites.
  • OmicsNet facilitates multi-omics data integration and systems biology analysis.

Conclusions:

  • OmicsNet addresses a critical gap in biological network analysis and visualization.
  • The tool empowers researchers to gain biological insights from complex, integrated datasets.
  • OmicsNet is freely available, promoting accessibility in biological research.