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Updated: Jan 31, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
Learning from Imperfections: Predicting Structure and Thermodynamics from Atomic Imaging of Fluctuations
Lukas Vlcek1, Maxim Ziatdinov, Artem Maksov2
1Joint Institute for Computational Sciences , University of Tennessee , Knoxville , Tennessee 37996 , United States.
Abstract:
In materials characterization, traditionally a single experimental sample is used to derive information about a single point in the composition space, while the imperfections, impurities, and stochastic details of material structure are deemed irrelevant or complicating factors in the analysis. Here we demonstrate that atomic-scale studies of a single nominal composition can provide information about microstructures and thermodynamic response over a finite area of chemical space. Using the principles of statistical inference, we develop a framework for incorporating structural fluctuations into statistical mechanical models and use it to solve the inverse problem of deriving effective interatomic interactions responsible for elemental segregation in a La5/8Ca3/8MnO3 thin film. The results are further analyzed by a variational autoencoder to detect anomalous behavior in the composition phase diagram. This study provides a framework for creating generative models from a combination of multiple experimental data and provides direct insight into the driving forces for cation segregation in manganites.
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