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Updated: Jan 31, 2026

Amplifying and Quantifying HIV-1 RNA in HIV Infected Individuals with Viral Loads Below the Limit of Detection by Standard Clinical Assays
Published on: September 26, 2011
Molecular recognition of the native HIV-1 MPER revealed by STED microscopy of single virions
Pablo Carravilla1, Jakub Chojnacki2, Edurne Rujas1
1Biofisika Institute (CSIC, UPV/EHU) and Department of Biochemistry and Molecular Biology, University of the Basque Country (UPV/EHU), P.O. Box 644, 48080, Bilbao, Spain.
Abstract:
Antibodies against the Membrane-Proximal External Region (MPER) of the Env gp41 subunit neutralize HIV-1 with exceptional breadth and potency. Due to the lack of knowledge on the MPER native structure and accessibility, different and exclusive models have been proposed for the molecular mechanism of MPER recognition by broadly neutralizing antibodies. Here, accessibility of antibodies to the native Env MPER on single virions has been addressed through STED microscopy. STED imaging of fluorescently labeled Fabs reveals a common pattern of native Env recognition for HIV-1 antibodies targeting MPER or the surface subunit gp120. In the case of anti-MPER antibodies, the process evolves with extra contribution of interactions with the viral lipid membrane to binding specificity. Our data provide biophysical insights into the recognition of the potent and broadly neutralizing MPER epitope on HIV virions, and as such is of importance for the design of therapeutic interventions.
Insights
Broadly neutralizing antibodies targeting HIV-1's Membrane-Proximal External Region (MPER) utilize interactions with the viral lipid membrane for enhanced binding specificity. This study reveals key biophysical insights into MPER epitope recognition on HIV virions.
Area of Science:
- Immunology
- Virology
- Biophysics
Background:
- Broadly neutralizing antibodies (bNAbs) targeting the HIV-1 Env gp41 subunit's Membrane-Proximal External Region (MPER) exhibit potent neutralization.
- The native structure and accessibility of the MPER epitope remain poorly understood, leading to various proposed models for antibody recognition.
Purpose of the Study:
- To investigate the accessibility and recognition mechanism of the native Env MPER on single HIV-1 virions using advanced microscopy.
- To elucidate the biophysical interactions governing MPER epitope recognition by bNAbs.
Main Methods:
- Super-resolution microscopy, specifically Stimulated Emission Depletion (STED) microscopy, was employed.
- Fluorescently labeled antibody fragments (Fabs) targeting MPER and gp120 were used to image native Env on single virions.
Main Results:
- STED imaging revealed a common recognition pattern for HIV-1 antibodies targeting either MPER or the surface gp120 subunit on native Env.
- Anti-MPER antibodies demonstrated enhanced binding specificity through additional interactions with the viral lipid membrane.
Conclusions:
- The study provides crucial biophysical insights into how potent and broadly neutralizing anti-MPER antibodies recognize their epitope on HIV virions.
- Understanding these interactions is vital for the rational design of novel therapeutic interventions against HIV-1.
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