Related Experiment Video
Updated: Jan 29, 2026

Determining if DNA Stained with a Cyanine Dye Can Be Digested with Restriction Enzymes
Published on: February 2, 2018
Trimethine cyanine dyes as deep-red fluorescent indicators with high selectivity to the internal loop of the
Yusuke Sato1, Sayaka Yajima, Akifumi Taguchi
1Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan. nishi@m.tohoku.ac.jp.
Abstract:
We report that TO-PRO-3, a thiazole orange analogue with a trimethine bridge, functions as a deep-red fluorescent indicator for the internal loop structure of the bacterial (Escherichia coli) ribosomal decoding region of the aminoacyl-tRNA site (A-site), which enables the assessment of A-site binding capability of various test compounds including blue and even-green-emitting compounds.
Related Concept Videos
Bacterial RNA Polymerase
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Bacterial RNA Polymerase
Indicators
Total Internal Reflection Fluorescence Microscopy
Transfer RNA Synthesis
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Internal Energy

