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Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
Published on: January 26, 2024
A computational study on the characteristics of open-shell H-bonding interaction between carbamic acid (NH2COOH) and
Adnan Ali Khan1,2, Mehdi D Esrafili3, Aziz Ahmad4
1Center for Computational Materials Science, University of Malakand, Chakdara, Khyber Pakhtunkhwa, Pakistan.
Abstract:
Quantum chemical computations were applied to investigate the characteristics of open-shell hydrogen-bonding interactions in the complexes of carbamic acid (NH2COOH, CA) with HO2, HOS and HSO radicals. All the resulting complexes were studied using the MP2, B3PW91 and B3LYP computational levels and 6311++G** basis set. Geometry optimizations show that the O-H⋯O contact is stronger than N-H⋯O and S-H⋯O. The interaction energies revealed that all the radicals form stronger hydrogen bonded complexes at site-1, as confirmed by electron-density (ρ) and corresponding Laplacian (∇2ρ) values obtained by atoms in molecule (AIM) analysis. Non-covalent interaction and reduced density gradient analysis support the AIM results. Natural bond orbital analysis was employed to obtain the stabilization energies (E(2)) due to charge delocalization between the interacting units. Energy decomposition analysis suggests that, for the title complexes, the exchange energy makes a larger contribution to the total interaction energy compared to other energy terms. Graphical abstract Open-shell H-bondinginteraction between carbamic acid (NH2COOH) and HO2, HOS or HSOradicals.
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When atoms gain or lose electrons to achieve a more stable electron configuration they form ions. Ionic bonds are electrostatic attractions between ions with opposite charges. Ionic compounds are rigid and brittle when solid and may dissociate into their constituent ions in water. Covalent compounds, by contrast, remain intact unless a chemical reaction breaks them.
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