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Updated: Jan 22, 2026

Analyzing Protein Architectures and Protein-Ligand Complexes by Integrative Structural Mass Spectrometry
Published on: October 15, 2018
The Molecular Architecture of Native BBSome Obtained by an Integrated Structural Approach
Hui-Ting Chou1, Luise Apelt2, Daniel P Farrell3
1Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.
Researchers reveal the structure of the BBSome, a protein complex crucial for ciliary protein transport. This structural insight explains how the BBSome facilitates the exit of signaling receptors from cilia, maintaining their unique membrane composition.
Area of Science:
- Cell Biology
- Structural Biology
- Biochemistry
Background:
- Cilia possess a unique membrane composition maintained by a transition zone diffusion barrier.
- This barrier is disrupted by the BBSome complex, which escorts signaling receptors out of cilia.
- Previous understanding of BBSome-mediated protein removal from cilia was limited by a lack of structural data.
Purpose of the Study:
- To determine the high-resolution structure of the BBSome complex.
- To elucidate the mechanism by which the BBSome facilitates protein exit from cilia.
- To provide a structural basis for understanding ciliary membrane composition regulation.
Main Methods:
- Purification of the BBSome complex from cow retina.
- Single-particle cryo-electron microscopy (cryo-EM) to generate a 4.9-Å resolution density map.
- Rosetta-based computational modeling constrained by crosslinking mass spectrometry (XL-MS) data.
Main Results:
- A near-complete Cα model of the BBSome was constructed.
- The BBSome exhibits a high degree of subunit interconnectivity, explaining its obligate nature.
- The BBSome exists in an autoinhibited state in solution, requiring conformational changes upon membrane recruitment by ARL6/BBS3.
Conclusions:
- The presented structural model offers the first detailed view of the machinery responsible for ciliary exit.
- This work provides critical insights into the regulation of ciliary protein composition.
- Understanding BBSome structure and function is key to deciphering mechanisms of ciliary signaling and transport.
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