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Updated: Jan 19, 2026

Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy
Published on: August 1, 2022
The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue.
Fabian F Voigt1,2, Daniel Kirschenbaum3, Evgenia Platonova4
1Brain Research Institute, University of Zurich, Zurich, Switzerland. voigt@hifo.uzh.ch.
We developed a new open-hardware light-sheet microscope for imaging large cleared samples quickly and with high resolution. This mesoscale selective plane-illumination microscopy initiative aims to make advanced imaging accessible.
Area of Science:
- Biomedical Imaging
- Microscopy Technology
- Open Hardware Development
Background:
- Light-sheet microscopy is effective for imaging large cleared biological samples.
- Current limitations exist in achieving high-resolution volumetric imaging of centimeter-sized samples rapidly.
Purpose of the Study:
- Introduce the mesoscale selective plane-illumination microscopy (SPIM) initiative.
- Address the need for advanced light-sheet microscopy instruments for large-scale imaging.
Main Methods:
- Developed an open-hardware light-sheet microscope system.
- Designed for compatibility with various cleared and expanded biological samples.
- Focused on achieving near-isotropic resolution for volumetric imaging.
Main Results:
- The mesoscale SPIM initiative provides a solution for imaging large cleared samples.
- Enables volumetric imaging of centimeter-sized samples with high resolution.
- The open-hardware nature promotes accessibility and further development.
Conclusions:
- The mesoscale SPIM initiative offers a powerful, accessible tool for advanced biological imaging.
- Overcomes current limitations in light-sheet microscopy for large-scale samples.
- Facilitates rapid, high-resolution imaging of cleared and expanded tissues.
Related Concept Videos
08:49Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy
07:20A Tissue Clearing Method for Neuronal Imaging from Mesoscopic to Microscopic Scales
06:52Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging
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