The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue.

Fabian F Voigt1,2, Daniel Kirschenbaum3, Evgenia Platonova4

  • 1Brain Research Institute, University of Zurich, Zurich, Switzerland. voigt@hifo.uzh.ch.

Nature Methods
|September 19, 2019
PubMed
Summary

We developed a new open-hardware light-sheet microscope for imaging large cleared samples quickly and with high resolution. This mesoscale selective plane-illumination microscopy initiative aims to make advanced imaging accessible.

Related Concept Videos

Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy08:49

Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy

This protocol describes methods for conducting magnetic resonance imaging, clearing, and immunolabeling of intact mouse brains using iDISCO+, followed by a detailed description of imaging using light-sheet microscopy, and downstream analyses using...
4.2K
A Tissue Clearing Method for Neuronal Imaging from Mesoscopic to Microscopic Scales07:20

A Tissue Clearing Method for Neuronal Imaging from Mesoscopic to Microscopic Scales

The protocol provides a detailed method of neuronal imaging in brain slice using a tissue clearing method, ScaleSF. The protocol includes brain tissue preparation, tissue clarification, handling of cleared slices and confocal laser scanning microscopy imaging of neuronal structures from mesoscopic to microscopic...
3.4K
Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging06:52

Optical Clearing and Labeling for Light-sheet Fluorescence Microscopy in Large-scale Human Brain Imaging

The present protocol provides a step-by-step procedure for rapid and simultaneous optical clearing, muti-round labeling, and 3D volumetric reconstruction of tens of postmortem human brain sections by combining the (SWITCH - H2O2 - Antigen Retrieval - 2,2'-thiodiethanol [TDE]) SHORT tissue transformation technique with light-sheet fluorescence microscopy imaging in a routinely high-throughput...
2.8K
Setting Up a Simple Light Sheet Microscope for In Toto Imaging of C. elegans Development08:37

Setting Up a Simple Light Sheet Microscope for In Toto Imaging of C. elegans Development

This protocol describes the setup of a light sheet microscope and its implementation for in vivo imaging of C. elegans...
23.7K
4D Light-sheet Imaging of Zebrafish Cardiac Contraction07:07

4D Light-sheet Imaging of Zebrafish Cardiac Contraction

This protocol utilizes light-sheet imaging to investigate cardiac contractile function in zebrafish larvae and gain insights into cardiac mechanics through cell tracking and interactive...
1.8K
Adipo-Clear: A Tissue Clearing Method for Three-Dimensional Imaging of Adipose Tissue08:52

Adipo-Clear: A Tissue Clearing Method for Three-Dimensional Imaging of Adipose Tissue

Due to the high lipid content, adipose tissue has been challenging to visualize using traditional histological methods. Adipo-Clear is a tissue clearing technique that allows robust labeling and high-resolution volumetric fluorescent imaging of adipose tissue. Here, we describe the methods for sample preparation, pretreatment, staining, clearing, and mounting for...
28.8K