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Proteome-wide Quantification of Labeling Homogeneity at the Single Molecule Level
Published on: April 19, 2019
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Protein quantification and visualization via ultraviolet-dependent labeling with 2,2,2-trichloroethanol.
Anand Chopra1, William G Willmore2,3,4, Kyle K Biggar5,6
1Department of Biology, Carleton University, 1125 Colonel By Dr, Ottawa, ON, K1S 5B6, Canada.
Scientific Reports
|September 28, 2019
Summary
2,2,2-trichloroethanol enables sensitive fluorescent protein quantification and visualization. This method offers improved sensitivity over traditional assays like UV absorbance and Bradford, with applications in microplate assays and SDS-PAGE.
Area of Science:
- Biochemistry
- Analytical Chemistry
- Molecular Biology
Background:
- Protein quantification and visualization are essential in biological research.
- Existing methods like UV absorbance and Bradford assay have limitations in sensitivity and dynamic range.
- Fluorescent labeling offers potential for enhanced detection.
Purpose of the Study:
- To develop a sensitive protein quantification assay using 2,2,2-trichloroethanol.
- To enable fluorescent visualization of proteins post-electrophoresis.
- To compare the performance of this new method against established techniques.
Main Methods:
- Utilized 2,2,2-trichloroethanol for covalent modification of tryptophan and tyrosine residues in proteins.
- Developed microplate-based and low-volume assays for protein quantification.
- Applied the method for pre-electrophoresis labeling and visualization of proteins in SDS-PAGE.
Main Results:
- Demonstrated specific fluorescent emission at 450 nm (excitation 310 nm) for 2,2,2-trichloroethanol-labeled proteins.
- Achieved superior sensitivity compared to UV absorbance at 280 nm (A280) and extended quantification range beyond the Bradford method.
- Developed a 100 μL assay with 10.5 μg sensitivity (up to 200 μg) and a 20 μL assay with 8.7 μg sensitivity (up to 100 μg).
Conclusions:
- 2,2,2-trichloroethanol provides a sensitive and versatile tool for protein quantification.
- The method facilitates fluorescent visualization of proteins, aiding in SDS-PAGE analysis.
- This approach offers a valuable alternative to conventional protein assay techniques.

